| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_09010 |
|---|
| Symbol | |
|---|
| ID | 8394792 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 1042007 |
|---|
| End bp | 1044769 |
|---|
| Gene Length | 2763 bp |
|---|
| Protein Length | 920 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644985660 |
|---|
| Product | protein translocase subunit secA |
|---|
| Protein accession | YP_003143294 |
|---|
| Protein GI | 257063622 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
|---|
| TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.665713 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0250229 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTTC TTTCCAAGCT GCTTACGTTT GGCGAAGGCA AGCAGCTCAA AGGCTACCAG
GCGAAGGCGG ACCGCATCGG AACGCTGGAG CCGTCCATGC AGGCTCTTTC CGATGACGAG
CTGCGTGCGC TGACCGCCGC GTACAAGGAG CGTGTCGCCA ACGGCGAATC GTTGGACGAC
ATCCTGCCCG AGGCTTTCGC AGCTGTGCGC GAAGCCAGCG TTCGCACGCT GGGTCTGCGC
CATTTCGACG TGCAGCTCAT CGGCGGCATG GCGTTGCATG AAGGCCAGAT TGCAGAAATG
AAGACCGGCG AAGGCAAGAC CCTCGTGTCC ACGCTCGCGG GCTATCTGAA CGCCCTGTCC
AACGACGGCG TCCACGTCGT CACCGTCAAC GACTACCTGG CCCGCCGCGA CAGCGAGTGG
ATGGGCCGCG TATACAAGTT CCTGGGCATG GAAGTCGGCC TGATTCAGAA CGGCATGCGC
CCCAAACAGC GCATCCCGTC CTACAAGGCC GATGTCACGT ACGGCACCAA TGCGGAGTTC
GGTTTCGACT ACCTGCGTGA CAACATGGTG ACCCGTGCCG GATCCCGCGT CCAGCGCGGG
CACAACTTCG CCATCGTCGA CGAGGTCGAC TCCATCCTTA TCGACGAAGC CCGCACGCCG
CTGATCATTT CCGGTGCCGG CGTGAAGGCT GCCGACACGT ACAAGAACTT CGCCCGCGCG
GTCCGCGGGC TGCAGCGCGA CCAGGATTAC GTCCTCGACG AGGCCAAACG CACGATTGTC
GCCACCGAGA TCGGTCTGGC GAAGATCGAG GCCCGCTTGG GCATCGACGA CATCTACGCC
GACCCTTCGG CCCAGCTGGC CAACCACCTG CAGCAGGCCC TGAAGGCGGA GTACGTCTTC
CATCTGGACA TCGACTATGT GAAGACCAAC GGCGAGATCA AGATCGTCGA CGAGTTCACG
GGCCGCATCA TGGAAGGCCG CCGTTACTCG GAGGGCCTCC ACCAGGCATT GGAGGCCAAA
GAAGGCGTCC GCATCCGCGA GGAGAACCAG ACGCTTGCCA CCATCACGCT GCAGAACTAC
TTCCGTCTGT ACAAGAAGCT CTCGGGTATG ACCGGTACGG CCATGACCGA GGACGCCGAG
TTCCGCCAGA TTTACAACCT GCCCGTTGTC GCCATTCCGC CCAACAAGCC GGTTATCCGC
ATTGACGAGA ACGATCTCAT CTACCGAACC CTCAAGGGCA AGTACAACGC CGTTGCCGAC
GAGGTGGAAC AGCGTCACGC CGCCGGCCAG CCGTGCCTGG TGGGTACGGT CTCCATCGAG
AGCTCCGAGC TGCTCTCCCG CATTCTGGAT AAGCGCGGCG TTCCACATGA GACCTTGAAC
GCCAAGAACC ATGAGCGCGA AGCGAACATC GTCGCCCAGG CAGGTCGCGT GGGTGCGGTC
ACCATCGCCA CGAACATGGC AGGCCGCGGT ACCGACATCC TGCTCGGCGG CAACCCCGAG
ATTCTGGCCG AAGACATTCT GGCGGAGTCG AACATCGACC CGGCAGAAGC CACCGACGAG
CAGCGCGCTT TGGCGCTGCA ACAGGCGAAA GCCATCACCT CCGCCGAGCA TGACCAGGTC
ATCGCGGCGG GCGGTCTGGC CGTCATCGGC ACCGAGCGCC ACGAATCCCG CCGTATCGAC
AACCAGCTCC GCGGCCGTGC CGGCCGTCAG GGCGACCCGG GCCTGACCCA GTTCTACCTG
TCGCTGGAAG ACGACCTCAT GCGCCGCTTC GGGTCCGATC GCATGGATTC CATCGGGCGT
ATGATGGAGA AGACCGACAT CCCCGAGGAC ATGCCCATCC AGCATTCCAT GGTGTCCAAG
GCCATCGAAA GCGCCCAGCA CCAGGTCGAG GCAATGCATT TCGCCGCTCG TAAGAGCGTT
CTGGAATACG ACGACGTCAT GAACCTGCAG CGCACCGCCA TCTACGACGA GCGCAATGCC
ATTCTGGACG GCAAGGACAT GTCCGAGCGC ATCGAAAGCA TCGTTCAGGA TGCCGTAGAG
GCCGTGGTCC AGGACTGCTG TCCGGCCCGC ACCGCCAGCG ACGACTGGGA CATCAAGGGT
GTGAACTCCT GGGTGGCGGA CATGACCGGT TTGGGCGGTT TCGACGCGAG CCAGGTCGAC
CACGACGACG ACCCGGCCAC ACTGACCGAC ATCATCTGCG ACCACCTGCT CGAGGTGTAC
AAGGGTAAAG AGGAGATCCT CGGACACGAG GTCATGCGCG GTCTGGAATC TCAGGTCATG
CTTCGCATCA TCGACGTTCG CTGGATGAAC CATCTTCAGG AGATGGATTA TCTGCGCACA
GGCATCGGCC TGCGTGCCAT CGGCCAGCGC GACCCTCTGG TCGAGTACAA GGGGGAGGCG
CACGCCGCCT TCGCCAACTT GACCTCCGGC ATGTACGAGG ACTTCCTGCG CACGATGCTG
CGTCTGCAGG TGGCAACGCC CGAAGAGGCC GAAGCCGTCG AATCGCAAGA TCACCCTGAT
GCCTTGGCCG GCAATGTGAA CTACTCGTCG CCCGAAGCCG CGTTGGAAGG CGCCGGCACC
GCCAACGCCG CCCGTGCGGC CGCAGCCGCC GCGACTCCGC AGGCTCCCAA GGCCGCGATG
CAGAAGGCCA AGACCTACCG CAAGGATGAA GACGACGACC CGTATGCGAA TGTGGGCCGC
AACGACCCGT GCCCTTGCGG AAGCGGCAAG AAGTTCAAGA AGTGCCACGG TATGTACCGA
TAG
|
|---|
| Protein sequence | MGFLSKLLTF GEGKQLKGYQ AKADRIGTLE PSMQALSDDE LRALTAAYKE RVANGESLDD
ILPEAFAAVR EASVRTLGLR HFDVQLIGGM ALHEGQIAEM KTGEGKTLVS TLAGYLNALS
NDGVHVVTVN DYLARRDSEW MGRVYKFLGM EVGLIQNGMR PKQRIPSYKA DVTYGTNAEF
GFDYLRDNMV TRAGSRVQRG HNFAIVDEVD SILIDEARTP LIISGAGVKA ADTYKNFARA
VRGLQRDQDY VLDEAKRTIV ATEIGLAKIE ARLGIDDIYA DPSAQLANHL QQALKAEYVF
HLDIDYVKTN GEIKIVDEFT GRIMEGRRYS EGLHQALEAK EGVRIREENQ TLATITLQNY
FRLYKKLSGM TGTAMTEDAE FRQIYNLPVV AIPPNKPVIR IDENDLIYRT LKGKYNAVAD
EVEQRHAAGQ PCLVGTVSIE SSELLSRILD KRGVPHETLN AKNHEREANI VAQAGRVGAV
TIATNMAGRG TDILLGGNPE ILAEDILAES NIDPAEATDE QRALALQQAK AITSAEHDQV
IAAGGLAVIG TERHESRRID NQLRGRAGRQ GDPGLTQFYL SLEDDLMRRF GSDRMDSIGR
MMEKTDIPED MPIQHSMVSK AIESAQHQVE AMHFAARKSV LEYDDVMNLQ RTAIYDERNA
ILDGKDMSER IESIVQDAVE AVVQDCCPAR TASDDWDIKG VNSWVADMTG LGGFDASQVD
HDDDPATLTD IICDHLLEVY KGKEEILGHE VMRGLESQVM LRIIDVRWMN HLQEMDYLRT
GIGLRAIGQR DPLVEYKGEA HAAFANLTSG MYEDFLRTML RLQVATPEEA EAVESQDHPD
ALAGNVNYSS PEAALEGAGT ANAARAAAAA ATPQAPKAAM QKAKTYRKDE DDDPYANVGR
NDPCPCGSGK KFKKCHGMYR
|
|---|
| |