Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_08760 |
Symbol | |
ID | 8394767 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 1016058 |
End bp | 1016987 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644985636 |
Product | tyrosine recombinase XerD |
Protein accession | YP_003143272 |
Protein GI | 257063600 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.940341 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 0 |
Fosmid unclonability p-value | 0.00000000128305 |
Fosmid Hitchhiker | No |
Fosmid clonability | unclonable |
| |
Sequence |
Gene sequence | TTGGACGAAG GGAGCGCTGC AGTCGCTCCC TTTCTTCCCG ACCGCAACGA TTATCTGGCC TATTTGTCCG TCGAGCGCGG TTCCTCGTCG TTGACGGTGG GTTCCTACGC GACCGACCTG AACGACTACA TCTCCTTTTT GGGGGAGCGG GGCGTGCCCG ACAGCGCCGC CATCACCCGC GACGATGTGG TGGCCTACGA ATACGACCTG CGCCGCCGCG GCTATGCTGA CTCCAGCATC GAACGGCATC TGTCGGCGCT CAAGGGCTTC CATCGGTTTT TGGTGGGAGA GGGTGTGACG AAGGGCAACC CCGCAGACCT GGTGTCGCTT CCCAAAGTCC CCGACCGCCT TCCGGACGTG CTGTCCGTAT CCGAAGTGAA CGAGCTGTTG GACCAGCCGT TCAAGGATGG TCCTTTGGGT CTGCGCGACC AGGCCGCATT GGAGCTGCTG TACGGATGCG GCCTGAGGGC GAGCGAGCTC ATATCCCTCG ACCTGGGAGA TGTGTTCTTC GCCGAAGGCA TCCTTCGGGT CATGGGCAAG GGGTCCCGCG AGCGCATCGT GCCCATTGGC GGCAGCGCGC AGCGGGTTCT TCTGGATTAT CTGGAAAACG GCCGTCCCAA GCTGGCCAAA CCCTCGAAAA CCGACGGCGC CGTCATACTG AACGCCCGAG GTGGAAGGCT TTCCCGCCAG GCATTGCACA CGATCGTGCG TACGGCCGGC GCGACCATCG GGCGACCCGA CCTGCATCCC CATACGCTGC GGCATTCGTT CGCCACCCAC ATGCTGGAGG GCGGGGCGGA CCTGCGAACC ATCCAAGAGA TTCTGGGGCA TTCCGACATC TCCACCACGC AGATTTACGT GCATGTGGAC CGTTCCCACA TCCGCGAAGA GTATCTGGCG GCCCATCCTC GCGCCCATCT GAAGGCTTAG
|
Protein sequence | MDEGSAAVAP FLPDRNDYLA YLSVERGSSS LTVGSYATDL NDYISFLGER GVPDSAAITR DDVVAYEYDL RRRGYADSSI ERHLSALKGF HRFLVGEGVT KGNPADLVSL PKVPDRLPDV LSVSEVNELL DQPFKDGPLG LRDQAALELL YGCGLRASEL ISLDLGDVFF AEGILRVMGK GSRERIVPIG GSAQRVLLDY LENGRPKLAK PSKTDGAVIL NARGGRLSRQ ALHTIVRTAG ATIGRPDLHP HTLRHSFATH MLEGGADLRT IQEILGHSDI STTQIYVHVD RSHIREEYLA AHPRAHLKA
|
| |