Gene Shel_08550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_08550 
Symbol 
ID8394746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp999932 
End bp1000678 
Gene Length747 bp 
Protein Length248 aa 
Translation table11 
GC content52% 
IMG OID644985615 
Productankyrin repeat-containing protein 
Protein accessionYP_003143255 
Protein GI257063583 
COG category[R] General function prediction only 
COG ID[COG0666] FOG: Ankyrin repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000454701 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTATTTCA TCTATGGAGA GAAGGATTCA GCGACGGCCG ATCTTTGTAG CAGGCTGTTT 
GCAGGGAGGT GTGATCGGTT TCAAATAGAC GCATTTCTGC GTAGTGGGGC AGATCCAAAT
GGGCATGTGA TGTATTCGCA AAGTGAAATG CCTGCATACT CGAAACAGAT AATCTCCCCT
TTGGGTATCG CTTGTCTGAT GGGGGATTAT GAATGTGCTG CCGCTTTGAT AGAACGAGGG
GCTCGGTGCT GGGACTTCCA AGTGGGGTTG GTGGGCGAGG CGGCGAGAGG AGGAAACGCG
CGTATTGTTG ACCTGCTCGT GCGAAACGGC GCCAGCGTCG ACGGAGAGAA CGGCTCTTAC
CAGAACCCTC CTTTGGTCAG GCTGAGCTGC ACGCCGCTTG ATGATTGGAG GATGGCGGAA
TGTCTGCTAA AGCATGGTGC CTACCCTGAC ATTATGGCTC AAAACGGAGT ATTCCCTTTG
TATTGTGCCG CCCAGATAGG CAACGTTCAG ATGATGAAGT CTCTACTGGA GTACGGTGCG
CGAATCAACA TGACCACGCC AAGGGGCAAT ACTGCATTGA TGAATGCATG CGATGAAGGA
GAGACTCAGG CTGTGAAGCT TCTGTTGGAC GAAGGCGCTG ATGCCAGCCT GAGAAATGCC
ATGGGTAAGA CATGCATGGA TTTTGCTCGT CAGAACGGTT ATGGCTGGAT TGTACAACTT
CTAAATGATT ACGGAGTGCG ATGGTAG
 
Protein sequence
MYFIYGEKDS ATADLCSRLF AGRCDRFQID AFLRSGADPN GHVMYSQSEM PAYSKQIISP 
LGIACLMGDY ECAAALIERG ARCWDFQVGL VGEAARGGNA RIVDLLVRNG ASVDGENGSY
QNPPLVRLSC TPLDDWRMAE CLLKHGAYPD IMAQNGVFPL YCAAQIGNVQ MMKSLLEYGA
RINMTTPRGN TALMNACDEG ETQAVKLLLD EGADASLRNA MGKTCMDFAR QNGYGWIVQL
LNDYGVRW