Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_08360 |
Symbol | |
ID | 8394727 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 966773 |
End bp | 969250 |
Gene Length | 2478 bp |
Protein Length | 825 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644985595 |
Product | collagenase-like protease |
Protein accession | YP_003143239 |
Protein GI | 257063567 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0826] Collagenase and related proteases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.593453 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGTCAATC CGTACCGCTC GCTCGAGCTT TTGGCCCCTG CAGGCGATAT GACGTGCTTG CACGCTGCCG TGTTGGCAGG CGCGCAAGCG GTATATCTTG GTCTGGGGGA GTTCAACGCA CGACGCGGAG CAGACAATTT CACATTGGAG AATCTGGGGG AAGCGTGTGA TTTCGCGCAT CTCCATGGCA CGCGCGTCTT TTTGACGGTG AATGTCGTCA TCCTTCCTGA TGAGACGGAA CGTGCGTTGG ACCTGGTCCG TCAGGCCTGG CTGCGCGGTA TCGACGCGGT CATCGTGCAG GATCTGGGCC TGGCGTCGGA AATCGGCCGC ACCATGCCGG AGGTGGAGAT GCATCTCTCG ACGCAGGCCA ACACACATGA CGAAGACGGC GTGCGGGCGG CGTGGGCTCT GGGCATGAGC CGCGTCACCT TCGCCCGCGA ACTGACGCTT TCGGAGATCT CTGACCTGTC CGATATTGCC CATGAGTTGG GCATGACCAC CGAATCCTTC GGGCACGGCG CACTGTGCGT GTGCTATTCC GGGCAGTGTT TCATGAGCTC CATGATCGGC GGGCGCTCTG CAAATCGGGG CATGTGCGCC CAGGCGTGCC GTCTGCCGTA TACGCTCGAA AACGAGGCGG GCGAAGAACT TCCTTCCGAC GGCGAGCATC TGCTGTCGCC GAAGGACCTG GCCACCATCG ATATGCTGCC GGAAATCGCC GTTACCGGTG TGGACAGCCT CAAGATCGAA GGCCGCATGA AGTCGCCCGA ATACGTCTGG ACCGTCGTGG GCCTGTATCG ACGGGTTCTG GACAGGCTGG CGCAGGACTT CGACGAGCGG TTTCCTGGCG GGGAGTGCTC AATCGAAGAT GTGCTTGCCG CCGGGCACGG CGAAGGCGTC GTCCCGACCG CCGATGAGCT GCGCATGCTG GCGGAGGCGT TCACTCGCGG GTTCACCCAT GCATATATGG AACGCGCGCG CGACAACGGC ATTATGAGTT ACACCAGGCC CAACAACCGC GGCGTGTTCG TCGGCCGCGT GGCCGATGTG CGTGATGGCG AAGTCGTGGT TGCGTCTGAT ATCGAGCTGC ACGCAGGCGA CCTAGTTGAA TTTTGGACGA ACAAGGGCCG ATTCGCCGTT TCCGTGTCCG AGCAGAGTTT CCTGGGCGGT GGCGAATACC TGCTTCCGGT GGAAGATCGC GTCCACAAGG GGGATCGCGT GTTCCGTGTT CGCAGCGCCG AGCTGGCGTT CGTGGACGAT TCTGATGCCG GGCTGGTGCC TGTCGAAGGC ACGGTCCGCC TCCGCATAGG CGAGCCTCTT ACTATCGAAT TTGCTTGCCA GGGTGTCGAC GTCCGGTTCG AAGGCGCCGT TGTCGAGGCG GCCCGGACCA AGGCCGTTTC TGCCGAAGAG GTGTACGACC ATATCGACCG GTTCGGAAAC ACGTCGTTCT ACTTGGACGC CCTCCACATC GACCTGGATG ACGGCGTAGG CATCGGCTTC TCGGCTCTGC ACAAGGCCCG CACGAAAGCC CTTAACCAGT TGAAAGATGC CCTGCTGGCG TCCTATCGCA TGCGCTCGCT GCCCAAGCCC GAACCTCGCG ACAAGAAACG CCGTCCCGCT GTTTCGGACA TCACCGTTGC AGCCATCGCG ACCAATCCTG CGTGCGCACG GGCCGCTAAG CGAGCGGGTG CGGATGCGGT TTACGTGCCC GTCCTGAACG TGAAGCGGGG CACGGCCACG CTCAAGGGCG TGCTGACCGA TTCGCCTGAG CAGGCCGGAT ACCCCGGGCG TCGCACCACG GTCATGCCCG TGGTGGACAA AGACCCGCTC AATCGCGACG AGGCCGTGGA CTACTGGTCG TACGCCAAAG AGGATAAGCC GCTTTACGTG GAGAACCTCG GCCAGCTGCT GAAGGCCCCT GAGGTCGGGG CGGTTCCCGA GGTGGGGCCG CATATCCCCA TCACGAATGC TTGGTCTTTG GACGTCGCGT CGTTGCTGGG CGCCCGACGC GTGTGGCTCT CGCCTGAGCT GACCCTGCGC CAGATAGCCG ATCTGAGCAC GAATTCCCCC GTGGAACTGG GCCTTACTGT CTACGGATAT CAGGAGCTCA TGACCACCGA GCATTGCCTG CTCATGAGCC AGGGCCCCTG CAATCAGAAG TGCGGCGAAT GCCCCCGCCG GCGTGAGGCT CGCTACTTCA AGGACCGCAA GGGGTACCGC TTCCCGATTG TCACAGACGC TTGCGGGCGA AGCCACCTGT ACAATGCTGT AGCCTTGGAT GCGGCGCACC TGCTTCCGGA GCTAATCGAG GCGGGGGTAA CCAGTTTCAT GGTCGATGCG ACGCTTCTGG ATGCCGACGA GACGGCGGAG GCCGTCGCCC GCGTGTGCCG AGCGCGTTCT CTGGCTCTCA ACGGCGGCCA GAAGGTCGAC AAGCTTCGTG GAAAAACGAC GGGGCACCTG TTCCGAGCCG TTCAATAG
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Protein sequence | MVNPYRSLEL LAPAGDMTCL HAAVLAGAQA VYLGLGEFNA RRGADNFTLE NLGEACDFAH LHGTRVFLTV NVVILPDETE RALDLVRQAW LRGIDAVIVQ DLGLASEIGR TMPEVEMHLS TQANTHDEDG VRAAWALGMS RVTFARELTL SEISDLSDIA HELGMTTESF GHGALCVCYS GQCFMSSMIG GRSANRGMCA QACRLPYTLE NEAGEELPSD GEHLLSPKDL ATIDMLPEIA VTGVDSLKIE GRMKSPEYVW TVVGLYRRVL DRLAQDFDER FPGGECSIED VLAAGHGEGV VPTADELRML AEAFTRGFTH AYMERARDNG IMSYTRPNNR GVFVGRVADV RDGEVVVASD IELHAGDLVE FWTNKGRFAV SVSEQSFLGG GEYLLPVEDR VHKGDRVFRV RSAELAFVDD SDAGLVPVEG TVRLRIGEPL TIEFACQGVD VRFEGAVVEA ARTKAVSAEE VYDHIDRFGN TSFYLDALHI DLDDGVGIGF SALHKARTKA LNQLKDALLA SYRMRSLPKP EPRDKKRRPA VSDITVAAIA TNPACARAAK RAGADAVYVP VLNVKRGTAT LKGVLTDSPE QAGYPGRRTT VMPVVDKDPL NRDEAVDYWS YAKEDKPLYV ENLGQLLKAP EVGAVPEVGP HIPITNAWSL DVASLLGARR VWLSPELTLR QIADLSTNSP VELGLTVYGY QELMTTEHCL LMSQGPCNQK CGECPRRREA RYFKDRKGYR FPIVTDACGR SHLYNAVALD AAHLLPELIE AGVTSFMVDA TLLDADETAE AVARVCRARS LALNGGQKVD KLRGKTTGHL FRAVQ
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