Gene Shel_08320 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_08320 
Symbol 
ID8394723 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp961656 
End bp963038 
Gene Length1383 bp 
Protein Length460 aa 
Translation table11 
GC content60% 
IMG OID644985591 
Productsite-specific recombinase XerD 
Protein accessionYP_003143236 
Protein GI257063564 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.113738 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAAAC CCAAGCAGCG AGAGAACTAC GGAAACGGCA GCATCACGCC CGAACTCGAC 
AAGGACGGCA ACCAGAAGAA GAACCGCAAA GGCCAGCTCG TTTGGCGCGT GTGCCTCTCG
TTCGGATACG AAACAGTCAT CGACGGGAAC GGCAACAAGA GGCGCAAGCG GAACAAGGTG
CAGCGCATGT GCTACGGCTC GCTCGGCGAC GCTCGCAAGT TCTGCAAGCA GCTACAGGCC
GAATACGAGA ACATCGACCA GCAGGCGGCT CAAGGCTCGT TCAGGTGGGC GTGCGACAAG
TGGCTTTCGT GGATGCGGGC GAAAGGTGGC GCATCCCAGG CCGTCTTGAG GCAATACACC
ACATGGCTCG GCTACATGTC AGACGTTCTC GGGGATAAGA AGCTGGTGGA GGTTAAGAAG
TCGGACGTTG AGGCCGCAAT GGTTGCGGTG AAGACCTCCC GCGACCTCTC GAATACGACG
ATGAACAAGA TGTTCGCTGT CACGAAAAGG CTGTTCGAGT ATTGCGTAGA CTCCGATTGG
ATTACCCGCA ACCCATGCCG CAACATCGAA GCGCCCGCGA AAGACCGGGT AACGTCACGC
CACAGCCTGA CCGACGAGGA AAGCGCCGTT CTCCGCAAAA GGCTCGACCT CGCAGAGGCC
GACGCGATCA GCGGCTACCT CGAAAAAGAG AACAGGCAAT CCGACCACAA CAACCTGTTC
GGCCGCTCGT GCGTGCGCGG CTTGTCGCAT ATAAGCGGCA TAATCGCTAT CCGAATCATG
CTCGCAACGG GTATGCGCAG GGGGGAGGTT TGCGGCCTCA CGTGGGGCGC GGTCGATTTC
GACAACAGCC AGATTTACGT CAGGCAATCG CTCACGGCCT CGGTGGAGGT GAAAGACCCC
AAGACCTACT CCGGCAGGCG TTCGCTGTTC GTTGAGCAGA ACACCATGCG GCACCTCAAG
GAGTGGAAGA CGTTCCAGGC GAAAGCCCTC CATATGGTCA TGCCGGACGG CACGGCGCTC
ACGCAGACCG ACGAAACGCC CGTATGCTGC TCGGACGTGG GCGGGTGGCT CGACCCCACT
AACCTTAGTC GTTGGTGGGG CGGCAACAAG AACAAGGGGC GCGAAGGCTT CCGCGACTCC
CTGGGGTTCC CCGAACTCAA CATGCACGAG CTAAGGCACA CCCAGGCGAC GATGCTTCTC
GGCAACGGCA TAGACGTTAA GAGCGTGCAG ACGCGACTCG GGCATTCCCG CGCATCGGTC
ACGCTCGACC AGTACGCCCA CGCGATACCA GCCAACGACA AGGCCGCTGC CGACCTTATG
GGCGAGATTA TGAACAAGAG CGTCCCCGAA ACGCCCGTCG TGCGGATAGG GGAGAGTGCC
TAG
 
Protein sequence
MAKPKQRENY GNGSITPELD KDGNQKKNRK GQLVWRVCLS FGYETVIDGN GNKRRKRNKV 
QRMCYGSLGD ARKFCKQLQA EYENIDQQAA QGSFRWACDK WLSWMRAKGG ASQAVLRQYT
TWLGYMSDVL GDKKLVEVKK SDVEAAMVAV KTSRDLSNTT MNKMFAVTKR LFEYCVDSDW
ITRNPCRNIE APAKDRVTSR HSLTDEESAV LRKRLDLAEA DAISGYLEKE NRQSDHNNLF
GRSCVRGLSH ISGIIAIRIM LATGMRRGEV CGLTWGAVDF DNSQIYVRQS LTASVEVKDP
KTYSGRRSLF VEQNTMRHLK EWKTFQAKAL HMVMPDGTAL TQTDETPVCC SDVGGWLDPT
NLSRWWGGNK NKGREGFRDS LGFPELNMHE LRHTQATMLL GNGIDVKSVQ TRLGHSRASV
TLDQYAHAIP ANDKAAADLM GEIMNKSVPE TPVVRIGESA