| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_08020 |
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| Symbol | |
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| ID | 8394693 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 928097 |
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| End bp | 929989 |
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| Gene Length | 1893 bp |
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| Protein Length | 630 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985562 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_003143207 |
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| Protein GI | 257063535 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.637143 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000100626 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCGCGCA TATTGGATAT GATTTCGTCT CCCGCGGATT TGAAGGTGCT TACCGATGAC
GAGCTTGCAA TTCTCGCTTC GGAAATCCGC GAGCAGATGA TTTCCACCAC GTCCCGCACA
GGTGGGCATC TTGCCCCCAG CTTGGGCGTG GTAGAACTCG TGCTTGCTTG CCATAGCGTT
CTGAACTGTC CCAAAGACAA GCTCGTGTTC GACGTTGGCC ATCAATCCTA TGCCCACAAG
CTGGTCACCG GACGGCTTGA ACAGTTCGAT ACCCTGCGCA CCTTCGGCGG CATTTCCGGG
TTCACCAAAC CCAACGAAAG CGAATACGAC CAGCATCCTT CGGGCCACGC CTCCGACTCG
CTGTCGGTCG CGTTGGGCCT TGCCATGGCC CGCGACCTGC GCGGATCCGA TGAGAAGATC
GTCTCCATCA TCGGAGATGC TGCGCTTTCC GGCGGCATGG CCTTCGAGGC TCTCAACCAA
ATCGGCCAGG TGCAGACGCC CATGGTGGTC ATCCTCAACG ACAACGAGAT GTCCATCGCG
AAAAACGTCG GTGCCCTGTC TTCGTATCTG GGCCGGTCGC GCACCTCCCG CAGCTACACG
CAGACCCGCG ACAACATCCA GTCGAAGCTG GAATCCACAG GTCGTTTGGG TCGCGGCCTG
GTGGATGTGC TGCGCAACAT GAAAGACTCC ATCAAGCAGT TCATTATCCC CAACGAGATG
CTTTTCGAGC AGTTGGGGCT TGTGTGCACG GCGCCGCTTG ACGGCCATAA CATCCCCGAG
CTCAAGCGTA CGTTGGAGGC GGTTCTCGAA TCCGATGTTC CCGTGCTGAT GCATGTGGTG
ACGAAGAAGG GTGCCGGTTA CGAGCCGGCC GAGAAGAACC CTGAGAAGTT CCACGGCATC
GCCCCCTTTG ACATCGCGAC CGGCGAGGTC AAATCCTCGG GCGGCGGAGC TCCCAAATAC
ACTTCGGTAT TCTCTCAGGC CCTGCTTAAG GAGGCCGAAG CCAACCAGGA TATCGTGGCC
ATTACGGCCG CCATGTCCAG TGGCACGGGG CTTGACGCCT TCGCGAAGCA GTTCCCCGAG
CGGTTCATCG ACGTGGGCAT CGCCGAAGAG CATGCCGTAG GCTTGGCGAG TGGCCTTGCG
TTGGGCGGCA AGCTGCCGGT GGTTGCCATC TACTCAACGT TCATGCAGCG CGCCATCGAC
CAGCTCATCA TCAACAACGC GTTGGCGAAC ACCCATGCGG TGTTCTGCCT GGACCGTGGC
GGTCTGGTGG GGGATGACGG CCCCACGCAC CACGGCATGT TCGACCTGAC GTACACCCGC
ATGATTCCGA ACATGAAGGT GCTTGCGCCT TCCAACGAGG CCCAGCTGGT CAACGGCCTG
CATACGGCGT TACATCTGGA CGGCCCCGTC ACGCTGCGCT ACCCGCGAGG TGAAGCCCGC
GGCGTCGAGG TCCCCGATGA GCCCGAAATG CTCGAGGTGG GGAAATCCAT CACCACCCGC
GAAGGCGACG ACGTGGCCAT CCTCGCGTTC GGCCGTATGG TGCAGGAGGC GGAAGCCGCT
GCAGACATGC TGGCTGAAGA GGGTATTTCC GTCCGTGTCG TAGACATGCT GTGGGTCAAG
CCCATGGACG AGGAAGCCAT CTGCAAGGCA TCGCTTGAGA CCAAGCTGGT CGTTACCGTC
GAAGACAACA TTCTCGCTGG CGGCGCAGGA TCGGGTGCGA TGGAGGTTCT CACTAGGCGT
TTGGTGCCTT CCGACCGCCG TCCGCAGTTC GTCATGCTGG GCATTCCCGA CGAGTTCGTG
CCACAGGGCA AGGTGCCGCA GCTCTACCAC ATGCTCGGCA TCGACGCCGA AGGCATAGCA
GATACCGTAC GTCGGCAGCT GGCCGCGCTG TAA
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| Protein sequence | MARILDMISS PADLKVLTDD ELAILASEIR EQMISTTSRT GGHLAPSLGV VELVLACHSV
LNCPKDKLVF DVGHQSYAHK LVTGRLEQFD TLRTFGGISG FTKPNESEYD QHPSGHASDS
LSVALGLAMA RDLRGSDEKI VSIIGDAALS GGMAFEALNQ IGQVQTPMVV ILNDNEMSIA
KNVGALSSYL GRSRTSRSYT QTRDNIQSKL ESTGRLGRGL VDVLRNMKDS IKQFIIPNEM
LFEQLGLVCT APLDGHNIPE LKRTLEAVLE SDVPVLMHVV TKKGAGYEPA EKNPEKFHGI
APFDIATGEV KSSGGGAPKY TSVFSQALLK EAEANQDIVA ITAAMSSGTG LDAFAKQFPE
RFIDVGIAEE HAVGLASGLA LGGKLPVVAI YSTFMQRAID QLIINNALAN THAVFCLDRG
GLVGDDGPTH HGMFDLTYTR MIPNMKVLAP SNEAQLVNGL HTALHLDGPV TLRYPRGEAR
GVEVPDEPEM LEVGKSITTR EGDDVAILAF GRMVQEAEAA ADMLAEEGIS VRVVDMLWVK
PMDEEAICKA SLETKLVVTV EDNILAGGAG SGAMEVLTRR LVPSDRRPQF VMLGIPDEFV
PQGKVPQLYH MLGIDAEGIA DTVRRQLAAL
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