Gene Shel_07930 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_07930 
Symbol 
ID8394684 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp917872 
End bp918510 
Gene Length639 bp 
Protein Length212 aa 
Translation table11 
GC content62% 
IMG OID644985553 
ProductFe-S-cluster-containing hydrogenase subunit 
Protein accessionYP_003143198 
Protein GI257063526 
COG category[C] Energy production and conversion 
COG ID[COG0437] Fe-S-cluster-containing hydrogenase components 1 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000707449 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCAAGT ACGCCATTGT CGTTGACGAG CACCGTTGCA TCGGTTGCTG GTCCTGCAGC 
GTTGCCTGCA AACTCGAGAA CAACCTCCCC GATCAGTCCT GGTGGAACAC CGTGCTGACC
GTGGGCGGCG ACAGTGTGAA CACTCCTGCC GGCGAATACG GCAAGAACAC CATCACCTTC
AATCCGTACC ACTGCATGCA TTGCGACACC CCGGCCTGCA CCGCCGTGTG CCCGACCGGC
GCCACCTACA AGGATGAGGA AACCGGCATC GTCATGCAGA ACGTGTCCGA GTGCATCGGC
TGCCGCAGCT GCATCGAGGC TTGCCCCTAC ACGGGCGTCC GCACCTACCT GGAAGAGGAC
CCCATTCCCG CCATGGAGTG GCCTGTCGGC AACCAGCAGG CACCCGACCA CCTGGTCAAC
ACCGTCGAGA AGTGCATCAT GTGCTACTAC CGCGTGAAGG ACGGCAAGGA CCCCGCATGC
GTCGAGGGCT GCCCCGCCTA CGCCCGCGTC TTCGGCGATT TGGACGACCC CGAAAGCGAA
GTGTCCAAGC TTCTGGCCGA GCGCGAGTAC TACGTGCTCA ACCCCGAAGC CGGCACCGGC
CCGAACGTGT ATTACCTTAA AGACACCACG CAGCGCTAA
 
Protein sequence
MTKYAIVVDE HRCIGCWSCS VACKLENNLP DQSWWNTVLT VGGDSVNTPA GEYGKNTITF 
NPYHCMHCDT PACTAVCPTG ATYKDEETGI VMQNVSECIG CRSCIEACPY TGVRTYLEED
PIPAMEWPVG NQQAPDHLVN TVEKCIMCYY RVKDGKDPAC VEGCPAYARV FGDLDDPESE
VSKLLAEREY YVLNPEAGTG PNVYYLKDTT QR