| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_07200 |
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| Symbol | |
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| ID | 8394611 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 833950 |
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| End bp | 836517 |
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| Gene Length | 2568 bp |
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| Protein Length | 855 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985481 |
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| Product | protein-export membrane protein SecF/protein-export membrane protein SecD |
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| Protein accession | YP_003143127 |
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| Protein GI | 257063455 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGAAA CCTCGTCCAA GGCGAAGCGC CGTTCGGGCG GCAACGTTGA CCGTCGCAAC
ATTTGGCTGG TGGTTGTAAC CGCGGTGCTG GTCATCGCGT CCATCGCCAT GTTCATGCCT
CCTCAGGAGC GCATCAATCA GGCCCTCGAC TTGCAGGGCG GTCTGTCGGT CGTTCTGAGT
GCGGAAAGCA ACGACGGCAG CGAGGTGACC GCCGAACAGA TGGAGACCTC CCGAAGCATT
ATCGAGAGCC GCGTCAACTT GCTGGGCGCC TCCGAAGCTG TGGTTCAGCT GCAGGGCGAC
AACCAGATCC TGGTCCAAAT TCCCGGCCTG TCCGATACCG AAGAGGCTTT GGAGACCATC
GGCAAGACCG GTAAGCTCGA ATTCGCCCGC CTGGACTCCT TTACCGACCA GGACGTTGTG
AACGCTATCC AGACCGGCGC CTATCTCTCT CAGGAGACCG TTACCGACGA AGCCGGCAAC
GTCTTCGTCA CGGGGGAAGG CACGCCTTCT CTTGAAGTGG AGCCCGGCAC CTACGAGCCC
ATCGTCACCG GTGAGAACAT CAACCGTGTG ACCGTCGGCC GCGAAAGCGA AACCTCGCAG
TTCTACGCCG TCGACCTCAA CTTGGACAGC GAAGGCACCA AGGCGTTCGC CGAAGCCTCC
GCCGACCTGG TGGAAGACCA CGGCCAGATC GTCATCATCT TGGACGGCGT GGTCCAAAGC
GCGCCTGCCG TTCAGTCCGA AATCCCCGAC GGCAACGTGG CCATTACCGG CAACTACAGC
CTGGCCGAGG CCCAGTCGTT GGTGACTGTG CTTGAATCCG GCTCGCTGCC TGTGAGCTTC
GAATATCAAA CCGCCCAGAC GGTCGGTCCC ACCTTGGGTC AGGGCGCGCT TCGCTCCGGC
GTCATCGTGG CGCTCATCGG CCTTCTGCTG GTCATGCTCT ACCTGCTCTT CTTCTACAAG
GGCCTGGGAT TCATCACCGC TGCTGCCATG GCCGTGTTCG CCTGCCTGTA TCTGGGCATC
CTGGCGTTGC TGTCTCACTT CAACCTGTTC TCGCTGAGCT TGGCAGGCAT CGCCGGCGTC
GTACTGACCA TCGGCATGGC CGCCGACTCG TCCATCCTCA CATTGGAACG CTTCCGCGAA
GAAATCCGTT TGGGACGTAG CGTTCGTGCT GCATCCATCA CCGGCGTCCG CCACGGCATC
ATGACCTCCA TCGACGCCGA CCTGGTCACG CTGGTTTCCG CTTTGGCCCT GTTCTTCCTC
GCGGCCGCTT CCGTCAAGGG CTTCGGCCTG ACGCTGGCTT TGGGCATCTT CTGCGACATC
CTCATGATGC TGCTCTTCAA GGCGCCGCTC ATCCGCCTGC TTGCGCCTAA GGCCATCGCG
AAGAACCCTG GTTTCTGGGG CGTGAAGGAC TGCGAAGAGG CCGCTCCGTA CTTCACGGAT
GAGAAGGAAG CCCCTGCCGG CGGCAAGATT CCCGGCCGCT TTATCAAACA CGACTTCAAC
ATCCTGGGTT GGCGCAAGGT AACGCTTACC GCAGCGGTTG TCGCCGTCGT TCTGGTGCTC
GCCATCCTGG GCATCCGCGG CATCAACTTC GGTATCGAAT TCGTCGGCGG CACCTCCGTC
GCATTCCACA ACACGGGCGA TGTCACCATC GAGCAGTTGC GTGATGCGTT CGACGAGGCT
GGCGAAACCG ACGCAGTCAT CCAGACCACT GAGACCGACG GCGAACCCGG CTTCCTGGTC
CGCACCACCA CCACTTCCGC CGAGGACGCG AACGTCGCTG CCAAAGCCGT CGCTGACACC
TTCGGATGGG AAACCGACAG CTTCGAGGTG ACCACCATCG GTCCCGACTG GGGCACGTCG
GTCATCAAGA GCTCGGTCAT CGCGTTCTTG GTTTCGCTCA TCCTGATCAT CATCTATATC
AGCATCCGCT TCCGCGATTA CAAGATGGGC GTGACCGCCA TCGTGGCTCT GCTGCACGAC
CTCATCCTGG TATTCGGCAT CTACGCTCTG ATCGGCCGTG AAGTCACGCC GAACACCATC
GCGGCGGTGC TTACCATTTT GGGCTACTCG CTGTATGACA CGGTGGTCGT GTTCCGCTCC
ATCGACGACA ACATGAAGGG CGACAGCATC AAGTGCACCT TCATGTCCAT GGCGAACCAC
TCCCTCAACC AGGTGCTTAT CCGCTCGCTG AACACATCCA TCACGTCGTT GATCCCGGTT
CTGTTCATGC TGCTGTTCGG CGCCGAAACG CTGAAGGACT TCGCGCTTGC CATGACCATC
GGCCTGGTTT CCGGCTGCTA CTCGTCGTTG GCCATCGCCA CGCCGCTGTA CGCCATCTGG
AAGACCCGTG AACCGGAATT CGCACGTCTG GTTAAGAAGT TCGGCGATAC CGTGCAGCTG
TTCACGCTGA ACCACCTGCC TGGCGAGCTG CGTGTTGCCG GCGCCGCGGC AACCGATGCC
GCAGTCGTCG ACGTTGGCGC TGATGCCAAG GGCGGCAAGG GCAACGGCGC GCATAAGTCG
AAGAGTCAGC CGCAACAGAA GCAGCGTTAC CGCAGAAAGG ACAAATAA
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| Protein sequence | MSETSSKAKR RSGGNVDRRN IWLVVVTAVL VIASIAMFMP PQERINQALD LQGGLSVVLS
AESNDGSEVT AEQMETSRSI IESRVNLLGA SEAVVQLQGD NQILVQIPGL SDTEEALETI
GKTGKLEFAR LDSFTDQDVV NAIQTGAYLS QETVTDEAGN VFVTGEGTPS LEVEPGTYEP
IVTGENINRV TVGRESETSQ FYAVDLNLDS EGTKAFAEAS ADLVEDHGQI VIILDGVVQS
APAVQSEIPD GNVAITGNYS LAEAQSLVTV LESGSLPVSF EYQTAQTVGP TLGQGALRSG
VIVALIGLLL VMLYLLFFYK GLGFITAAAM AVFACLYLGI LALLSHFNLF SLSLAGIAGV
VLTIGMAADS SILTLERFRE EIRLGRSVRA ASITGVRHGI MTSIDADLVT LVSALALFFL
AAASVKGFGL TLALGIFCDI LMMLLFKAPL IRLLAPKAIA KNPGFWGVKD CEEAAPYFTD
EKEAPAGGKI PGRFIKHDFN ILGWRKVTLT AAVVAVVLVL AILGIRGINF GIEFVGGTSV
AFHNTGDVTI EQLRDAFDEA GETDAVIQTT ETDGEPGFLV RTTTTSAEDA NVAAKAVADT
FGWETDSFEV TTIGPDWGTS VIKSSVIAFL VSLILIIIYI SIRFRDYKMG VTAIVALLHD
LILVFGIYAL IGREVTPNTI AAVLTILGYS LYDTVVVFRS IDDNMKGDSI KCTFMSMANH
SLNQVLIRSL NTSITSLIPV LFMLLFGAET LKDFALAMTI GLVSGCYSSL AIATPLYAIW
KTREPEFARL VKKFGDTVQL FTLNHLPGEL RVAGAAATDA AVVDVGADAK GGKGNGAHKS
KSQPQQKQRY RRKDK
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