Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_05890 |
Symbol | |
ID | 8394481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 686490 |
End bp | 687908 |
Gene Length | 1419 bp |
Protein Length | 472 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 644985351 |
Product | putative efflux protein, MATE family |
Protein accession | YP_003142997 |
Protein GI | 257063325 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGGCCGCAG GGACGTTCGA CATATCGGAG TTGCGCGAAG GCGCCATGCC GTCGCGACGC GAGATGATGC GCCTGGTGGC AAGCCTGAGC ATGCCGGCGA TCATGGCCGA ACTGAGCGTC ATCATCATGC AGTACATCGA CGCTGCCATG GTGGGCAGCC TGGGCGCGCA GGCCTCCGCA TCCATCGGCC TGGTGGAAAC CACGCTGTGG CTCACCGAGG GGCTGTGCTT TTGCGCAGCC ACGGGATTCA CCGTGCAGGT GGCGCAGCTT GTGGGCGCGG GCCGCGACGA CCGTGCCCGC AACGTGACGC GCCAGGCCAT TCTGGTGCTG ACCGCGTTCA GCCTGGTAAT GCTGGGCATA AGCGCCGCCA TATCGGGCAG CCTTCCCGCT TGGCTCGGCG GTCGGCCCGA GCTTCTGGAC GATGCGTCGC GGTATTTCCT CATTTTCTCC TGCGCGCTGC CTGCCATGCA GATGATTCGC CTGGGAACAG GTGTTCTGCA ATGCAGCGGC GACATGCGCA CGCCGAGTGC CCTCAACATC CTGGGCTGCG TGCTGGATGT GGTGTTCAAC TGGTTCCTCA TCTTCCCGAC GCGGGACGTG GACCTGTTCG GCGTGGCGTT TGCCATGCCG GGCGCGGGGC TGGGCGTGAC AGGCGCAGCT GTGGGTACGG CGGCCTCGCA GGTTGTGGTC ATGGTGCTGA TGATCTACTT CGCGCTGATC AGGAATCCTA AAATCAACCT GCGCATACCC GGCAGCTGGC GGTTGGAACG CCGCACGGTG GCGACGGCGG GTAGGCTGTT TGCGCCCATG GCCCTGGAGC GCATCGTCGA GAACAGCGCC TACATCGCCA CGACGGTTAT CGTGGCACCG CTCGGGACCA CCGCCATGGC CGCGCACACG CTGGCGATCA CCGCCGAGAG CCTGTGCTAC ATGCCGGGTT ACGGCATCGG CGCGGCGGCC ACCATGCTGG TGGGGCAGGC GCACGGTGCG GGGCGACGTG ACTTGACCCG CGGGTTCGCG AATTTCGCGG TGCTGTTGGG CATGCTGCTC ATGGCGGCGG CGGGCGTGGT GCTGTTTGTG GCGGCGCCGT ACATCATGGC ATGGCTTACC CCTGACCAGC AAGTTCGCGA GCTGGGCACG CTGGTGCTGC GCATCGAGTC CTTCGCCGAG GCGTTCTACG GCGCGCAGAT CGTGGTCAGC GGATCGCTGC GCGGCACGGG CGACATCCTG GGGCCCACCG TCATCAACCT GGCGTGCATG TGGGGGTTGC GCATTGCCGC GTCGGTTCCG TTGGCGCTGG TCATGGGGCT GCCAGGCGTG TGGATTGCCA TGGCTGCGGA GCTTGTGGTG TGCGGCGGCA TCCTGCTTGT CCGGCTGCGT CGCGGCAAAT GGCTCGACCG CAAGGTACTG GCCGGATAG
|
Protein sequence | MAAGTFDISE LREGAMPSRR EMMRLVASLS MPAIMAELSV IIMQYIDAAM VGSLGAQASA SIGLVETTLW LTEGLCFCAA TGFTVQVAQL VGAGRDDRAR NVTRQAILVL TAFSLVMLGI SAAISGSLPA WLGGRPELLD DASRYFLIFS CALPAMQMIR LGTGVLQCSG DMRTPSALNI LGCVLDVVFN WFLIFPTRDV DLFGVAFAMP GAGLGVTGAA VGTAASQVVV MVLMIYFALI RNPKINLRIP GSWRLERRTV ATAGRLFAPM ALERIVENSA YIATTVIVAP LGTTAMAAHT LAITAESLCY MPGYGIGAAA TMLVGQAHGA GRRDLTRGFA NFAVLLGMLL MAAAGVVLFV AAPYIMAWLT PDQQVRELGT LVLRIESFAE AFYGAQIVVS GSLRGTGDIL GPTVINLACM WGLRIAASVP LALVMGLPGV WIAMAAELVV CGGILLVRLR RGKWLDRKVL AG
|
| |