| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_05680 |
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| Symbol | |
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| ID | 8394460 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 661444 |
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| End bp | 662454 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644985330 |
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| Product | sortase family protein, LPXTG-site transpeptidase |
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| Protein accession | YP_003142976 |
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| Protein GI | 257063304 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
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| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.781628 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCCTGA ACCTGAAACA TATTGATTGG AAAATGGCTG CGTTGGTGGT CTTCTTCCTT
ATTGGCATCG GGATCATGCT CTATCCATTC GTGTGCAACG CCTACTACCA GTATCAGGCC
GACAAGTGGA TGGACGAATA CTCCGCAGTC ATCGAAGATG GTGACAACGA GGAATACGCC
CAGGCCATTG CCGAAGCCCA GGAATACAAC CAGGTATTGG TTGGTCAGAC GGTTCCGGAC
GTCTTCGCTA TTCGCGAAGG CACCACCGAT AAAACGTACG AAAGCATGCT CAACGTGCTT
GGCAACCAGA TCATGGGCTC GATTGAGATT CCTGTTATCG ATGTGAACCT GCCCATCTAC
CACTACTCGA CCGTCGAGTC GTTGGAGATG GGCTGCGGAC ACATCTTCGG CAGCAGTCTG
CCCGTGGGCG GTGACAGTTC GCATGCGGTC ATTACGGCCC ACCGCGGCTT GCCGACTGCG
AAGATGTTTA CCGACCTGGA CCAGCTTGAA AAGGGCGACA AGTTCTACCT CCACATTCTG
GACCAGACGC TGGCGTACGA AGTCATCGAG ACCGAAACCG TGGCGCCCGA TGAGACCCGT
TCGCTCGCCA TCCAAGAAGG CGAGGACCTG GTCACGCTGG TTACGTGCAC GCCTTACGGC
GTCAACACGG ACCGCCTGCT GGTGCACGCG CAGCGTGTTC CTTACGAACC TGGTGACGAG
AACGCGCCGG TCAAGCACCA CATGTCGTCG GTTATCGCCA ACCTGCTCAA GGGTGCATGC
ATCCTGGCCG GTGTTCTGGC TGCGACCATT CTGGCTTGGG TGCTGCGCAA GCGCCGCGAA
CATGCGCGTA GATTGGCGGA ATACTCCGTC GGATCGCGTG ACGGTGCTGC AGTGGGCGCA
GCGTCTGAGA CGGATGCACA CGAGAACGAG AACGTGTTCT ACGAGGTGGA CATGCCTCGG
ACGAACGACG GTCCTTTGGG TACAACCAAC TGGAGGAACC TAGATGAGTA A
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| Protein sequence | MTLNLKHIDW KMAALVVFFL IGIGIMLYPF VCNAYYQYQA DKWMDEYSAV IEDGDNEEYA
QAIAEAQEYN QVLVGQTVPD VFAIREGTTD KTYESMLNVL GNQIMGSIEI PVIDVNLPIY
HYSTVESLEM GCGHIFGSSL PVGGDSSHAV ITAHRGLPTA KMFTDLDQLE KGDKFYLHIL
DQTLAYEVIE TETVAPDETR SLAIQEGEDL VTLVTCTPYG VNTDRLLVHA QRVPYEPGDE
NAPVKHHMSS VIANLLKGAC ILAGVLAATI LAWVLRKRRE HARRLAEYSV GSRDGAAVGA
ASETDAHENE NVFYEVDMPR TNDGPLGTTN WRNLDE
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