Gene Shel_05100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_05100 
Symbol 
ID8394402 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp599130 
End bp599585 
Gene Length456 bp 
Protein Length151 aa 
Translation table11 
GC content62% 
IMG OID644985273 
Productprotein-tyrosine-phosphatase 
Protein accessionYP_003142919 
Protein GI257063247 
COG category[T] Signal transduction mechanisms 
COG ID[COG0394] Protein-tyrosine-phosphatase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCGTA TCCTGTTCGT GTGCCACGGC AACATCTGCC GGTCGACGAT GGCCCAGTAC 
GTTTTGCAGG ATATGGTGGA CAAACGCGGT CTGACCTCGC AGTTCGCCAT CGATTCCGCA
GCCTGCCGCA ACGACGAGAT AGGCTCGCCC GTGGACCCGC GCACCCGCCG CATGCTGGAA
TCGCAAGGCG TGCCCTGCGG CAACCATATC GCCCGCCGCC TGCGCCGCGA CGAGGCCGCC
GACTGGGACA TGGTCGTCGG GATGGACGGC GAGAACATGC GCGACTTGAA GCGCCAGCTT
CCTTCCGACG CTCAGGCGAA GTGCTTCAAG CTTATGGAAT TCGCAGGTCA GAGCCGCGAT
GTGGCCGATC CTTGGTATAC GCTGAACTTC GACGAAACCT ACGACGACGT AGTCGCCGGC
TGCCAGGGCC TGCTGTCCTA CCTGGGGATC AAGTAG
 
Protein sequence
MIRILFVCHG NICRSTMAQY VLQDMVDKRG LTSQFAIDSA ACRNDEIGSP VDPRTRRMLE 
SQGVPCGNHI ARRLRRDEAA DWDMVVGMDG ENMRDLKRQL PSDAQAKCFK LMEFAGQSRD
VADPWYTLNF DETYDDVVAG CQGLLSYLGI K