Gene Shel_04820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04820 
Symbol 
ID8394374 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand+ 
Start bp568009 
End bp569070 
Gene Length1062 bp 
Protein Length353 aa 
Translation table11 
GC content62% 
IMG OID644985245 
ProducttRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 
Protein accessionYP_003142891 
Protein GI257063219 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain 
TIGRFAM ID[TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0110785 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTACAAC GAGTTCTGGT CGGCATGAGC GGCGGCGTGG ATTCCAGCGT GACGGCATAC 
CTGCTGCTGC GTCAGGGCTA CGAGGTCGTC GGCGCCACCA TGAATCTGTA CGACCCTGGG 
CGCCTCGGCG TGCCCGATGT TCGCGACGGC GAATCAAACG ATCTTGAAGA TGCCCGCAGC 
GTGGCGAATC GGCTGGGCAT AGCGCATCAT GTTCTCGATT TCGGGTGCGA ATTCGAGAAC 
AACGTGGTCC GCCCCTTCGC CCAGGCCTAC GCGGACGGCC TGACGCCCAA CCCGTGCATC 
GCATGCAACC GTCATCTGAA GTTCGGCCTC ATGCTGAAAG CCGCCCGCGA GTTGGGCTGC 
GACGGCATCG CGACAGGACA TTACGCGCGC ATTGCTCAGC GTCTGGACGG CCGATTTGTC 
CTGATGAAAG GGCTGGATGA CGCGAAAGAC CAGGCCTACG TCCTTTACCA CATGACCCAA 
GACCAGCTTG CCCATACGGT TCTGCCTCTG GGCGAATACA CCAAGCAGCA GGTGCGAGCC 
ATCGCGGCTG AGCAGGGGTT CGCCAATGCC CGAAAGCACG AGAGCCAGGA CATCTGCTTC 
GTGCCGGACG GCGACTATGT TGGTTTTCTC GAACGTTACG CGGGGCTTGT TCCCGAACCT 
GGCGATGTGC TGGATGAAAA CGGTGCGGTG CTCGGGCAGC ATAGGGGCGC CATCCGCTAC 
ACGCTGGGCC AGCGCAAGGG CATCGGCATC GCGTCGACAC AGGCGCTGTA CGTAACCGCT 
AAAGACATGG CGGCAAACAC CATTACCATG GGGCCTGCCG ACGCTTTGCT GGCGGACGGC 
TGCACGGTGG GGAATTGGAA TTGGATTCTA CCTGATGAGG GGCCGGTTCA TGCCATGGTG 
AAAACCCATT ACCGGCAAAA GCCCCACGGC GCCATGGTCG TGCCGCAGGA AGACGGCACG 
GTGAGGTTCG ACTTCGACGA GCCGTCGCGG CTGGCGGCGC CGGGGCAATC TGCCGTCGCC 
TACATCGGCG ATACTGTGCT CGGCGGCGGC ATCGTCCTGT AG
 
Protein sequence
MVQRVLVGMS GGVDSSVTAY LLLRQGYEVV GATMNLYDPG RLGVPDVRDG ESNDLEDARS 
VANRLGIAHH VLDFGCEFEN NVVRPFAQAY ADGLTPNPCI ACNRHLKFGL MLKAARELGC 
DGIATGHYAR IAQRLDGRFV LMKGLDDAKD QAYVLYHMTQ DQLAHTVLPL GEYTKQQVRA 
IAAEQGFANA RKHESQDICF VPDGDYVGFL ERYAGLVPEP GDVLDENGAV LGQHRGAIRY 
TLGQRKGIGI ASTQALYVTA KDMAANTITM GPADALLADG CTVGNWNWIL PDEGPVHAMV 
KTHYRQKPHG AMVVPQEDGT VRFDFDEPSR LAAPGQSAVA YIGDTVLGGG IVL