| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_04310 |
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| Symbol | |
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| ID | 8394323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Slackia heliotrinireducens DSM 20476 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013165 |
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| Strand | + |
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| Start bp | 514761 |
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| End bp | 517184 |
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| Gene Length | 2424 bp |
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| Protein Length | 807 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644985195 |
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| Product | anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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| Protein accession | YP_003142841 |
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| Protein GI | 257063169 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
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| TIGRFAM ID | [TIGR00509] molybdopterin guanine dinucleotide-containing S/N-oxide reductases
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00139341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.037099 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAAT CCACATTGGG GGAGGTCAGC CGCCGTTCGT TCGTAAAGAC GGCTGCTGGT
TTGGGCGCCT TTGCCGCACT CGGCGTTACC GGCTGCAGCG CTTCGTTCCA TGAGGAAGAG
CCTGCGACTG AGGAAGAAGT CGAAGTCGAG GCGGAAGAGC ATGAAACTTG GGCGCATTGT
TCGCCGAACT GCTATGGTCG CTGCGCGCTG CGCGTTGTGA CCCAGAACGA CGAAGTCGTG
CGCGTTGAAA CCGACAACAC CGGTGATGAT GTGTTCGGCG ACCATCAGAT CCGCGCTTGC
CTGCGCGGTC GTTCCATGCG TCGCTGGATC AACCATCCCG ATCGTCTGCA GTATCCCATG
AAGCGCGTCG GCAAGCGTGG CAGCGGCGAG TACGAGCGCA TCACCTGGGA AGAGGCTATC
GATACCATTT GCGAGAAGTA CCAGAGCATC CTTGACGAGT ACGGCCCTGA AGCCGTGCTC
ATCGCGCCCG CCAGCGGCGT CAAGGCTCAG AACATCTCCG ACTTCGTGGG TCGTTTCTGC
AACTGCTTGG GCGGTTATGT CCACCAGTCC GGCGGTTACA GCATGGCTCA GGCCCGCGTC
TCCGTTCCTT ACCTGTACGG CGACCGCAAG AACAACGCCA CCTACGACCT GAAGAACTCC
AAGTTGTGTG TCATGTTCGG CGACAACCAC GCCGATAACA AGCTGGGCGG CGCAGGCGAC
TGCTACCAGA TCCAGCAGGC CCTGGAGGCC GGCGGCGCCA AGGTCATCGT CATCGACCCG
CGCTACACCG CCACTTCGGC CCTGCGTGCC GACCAGTGGA TTCCCATCCG TCCCGGCACC
GACGCAGCTC TGGCTGACGC CATCGCTTAC GTCCTGATCA CCGAGGACAT GGTGGACCAG
GATTTCCTGG ACACCTACTG CATCGGCTAC GACGAGAGTA CGCTTCCCGA AAGCGCTCCC
GCAAAGTCCG ACTACAAGAG CCACATTCTG GGCGAAGGCC CGGACGGCAC CGCCAAGACC
CCTGCTTGGG CCAGCGAAAT CACCGGCATC CCCGAACAGG TCATCAGCGA CCTGGCGCAT
GAGATCGGCA CCACGCAGCC GTGCTGCATC ATGCAGGGAC TCGGTCCCCA GCGCCAGATG
AGCGGCGAGC AGACCTGCCG TGCCATCTGC ATGCTCGAGG TTCTGCTCGG CGGCATTGGC
AAGCGCGGCA TGGGCACCGG ATTCATGTTC GGCAACGACA AGATCGACGG CGTAGAAGTT
CCCATGGGCA AGGGCACTTT CAACATCACC ATCCCTACTT TCATGTACAT GGACGCCATC
GACGACTACA CCAAGATCAC GCTGCTCGAC TCCGGCCTGA CCGGCGCCGG CCGCCTGCGT
CAGCCCATCA AGATGATGTT CAGCCACGGC GGTAACAGCC TGACCAACCA GCACGGCAAC
ATCAATCGCA GCCATGAGAT CCTCGGCGAC GAGTCCAAGT GCGAAATGAT CGTCGTGTGG
GAAACCATGC TGACCGACTC CGCCAAGTAC GCCGACATCA TCCTGCCTGA CCTCATGCCT
TCCGAGCAGC CCAGCTTCGC CGTCGGCGAA TACTCCGGCA ACATGGGCTA CGCCATTCTG
GGCACCGCCT GCACCGAGCC CAAGTTCGAG CGCAAGACCC TGTACCAGAG CCTGACGCTC
ATGGCTGAGA AGATGGGCGT TGCCGAGAAG TTCACCGAGG GTCTGGACGA GATGGGCTGG
CTGGAGCAGA TGTACGCCAC CGCCCGCGAA GAGGATCCCG ATCTGCCCGA GTGGGAAGAC
ATGCTGGAGA TGGGCGTCTA TCGCCGCCTG CACAAGGACG GCGCCGACGG CGGCTCCATC
GCCTACAAGA AGTTCATCGA CAACCCGGGC AAGGAGAGCC TGAAGACTCC TTCCGGAAAG
ATCGAGATCT ACTCCGAGCG TCTGGCCAAG ATCGCCGATA CGTGGCATCT GGGCGAAAAC
GACGTCATCA TGCCGATTCC CGTGTACGTG CCTCCTGCAG AGTACGGCTA CGACGACCCG
CGTCGTGACG AGTACCCGCT GCAGATGGTC GGCTTCCATG AGCGCGGCCA TGCGCATTCG
TCGTTCACCC AGATCGACAT CCTGCAGGCC ACCAACATGA AGCGTTTCTG GATCAACACG
GCCGACGCCG AAGAGCGCGG CATCGCCGAT GACGACATGG TCGAGGTCTT CAACGAGTTC
GGCCGCATGC AGGTTCAGGC CAAGGTGACC GACCGCATCA TGCCGGGCGT CACGGCCATG
GGCCAGGGCT ATTGGTTCGA AGCGAACGAG GACGGCGTCG ACGTGGGCGG TTGCATCAAC
ACGCTCACCA ACTCCCATCC GTCTCCGCTG GCCAAGGCCA TTCCCGCCCA TACCAACCTC
GTTGAAGTCA AGAAGGTGAT GTAA
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| Protein sequence | MSKSTLGEVS RRSFVKTAAG LGAFAALGVT GCSASFHEEE PATEEEVEVE AEEHETWAHC
SPNCYGRCAL RVVTQNDEVV RVETDNTGDD VFGDHQIRAC LRGRSMRRWI NHPDRLQYPM
KRVGKRGSGE YERITWEEAI DTICEKYQSI LDEYGPEAVL IAPASGVKAQ NISDFVGRFC
NCLGGYVHQS GGYSMAQARV SVPYLYGDRK NNATYDLKNS KLCVMFGDNH ADNKLGGAGD
CYQIQQALEA GGAKVIVIDP RYTATSALRA DQWIPIRPGT DAALADAIAY VLITEDMVDQ
DFLDTYCIGY DESTLPESAP AKSDYKSHIL GEGPDGTAKT PAWASEITGI PEQVISDLAH
EIGTTQPCCI MQGLGPQRQM SGEQTCRAIC MLEVLLGGIG KRGMGTGFMF GNDKIDGVEV
PMGKGTFNIT IPTFMYMDAI DDYTKITLLD SGLTGAGRLR QPIKMMFSHG GNSLTNQHGN
INRSHEILGD ESKCEMIVVW ETMLTDSAKY ADIILPDLMP SEQPSFAVGE YSGNMGYAIL
GTACTEPKFE RKTLYQSLTL MAEKMGVAEK FTEGLDEMGW LEQMYATARE EDPDLPEWED
MLEMGVYRRL HKDGADGGSI AYKKFIDNPG KESLKTPSGK IEIYSERLAK IADTWHLGEN
DVIMPIPVYV PPAEYGYDDP RRDEYPLQMV GFHERGHAHS SFTQIDILQA TNMKRFWINT
ADAEERGIAD DDMVEVFNEF GRMQVQAKVT DRIMPGVTAM GQGYWFEANE DGVDVGGCIN
TLTNSHPSPL AKAIPAHTNL VEVKKVM
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