Gene Shel_04290 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04290 
Symbol 
ID8394321 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand+ 
Start bp512324 
End bp513016 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content55% 
IMG OID644985193 
Producttranscriptional regulator 
Protein accessionYP_003142839 
Protein GI257063167 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0356089 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.115644 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTGAGG CTGGGCATGA GCATGGAGAA CGGAGCGGTT TGATGGGTAC GCCAGGGGTG 
GTGCCGTCCT TTTCGAAGGA CGAGATAGTT GAGGTCGCCC TTGCTTTGAT TGATGAAAAG 
GGTACAAAAG GCTTCACCAT CCGCGCTCTT GCGGATCGTG TGGGCATAAG TCCTATGGGA 
ATCTACACCT ACTTCTCATC CAAAGAAGAC ATCGCCGCAC ATGTGTTGGG GCGTGTGCTG 
AGCGAGGTCG ACAACGAACC TGTGCCGGGG GAGTTCTGGG AAGATACGCT GCATAGAGTG 
TGTGATTCCA TCAGGGCTGC TGCGCTTGCG CACCCGAAAG CCCGGCTGAT GCGACACGAG 
CTTGGTGTCG GCTGGCCTCA GGTGCACAAC AGGCATGTGT ATTGCCTGCA TCTAGACCAG 
GGTATGCCAA GGGGTGTCTA CGAGCACATG CACCATGTGC TGCGCGCGTT TCTCGATGGA 
TATCTTGACC AGGAAGCCAG GGCCACCGTT CAAAGGACGG ATTCCGACAT TCCCGACGAA 
GAAGAATGGA CGCGTGTGTC GATTGGCTCG TATGAGAGCG AAGCGTTCAA TCAGGGCATT 
GATTTCATCA TTGCAGGCAC TCGGGCGATA GCGGCGCCAA GCGATTGCGA ATGGTATACG 
CCTGAAGATC CTGCGAAATG GACCCTGATT TAG
 
Protein sequence
MIEAGHEHGE RSGLMGTPGV VPSFSKDEIV EVALALIDEK GTKGFTIRAL ADRVGISPMG 
IYTYFSSKED IAAHVLGRVL SEVDNEPVPG EFWEDTLHRV CDSIRAAALA HPKARLMRHE 
LGVGWPQVHN RHVYCLHLDQ GMPRGVYEHM HHVLRAFLDG YLDQEARATV QRTDSDIPDE 
EEWTRVSIGS YESEAFNQGI DFIIAGTRAI AAPSDCEWYT PEDPAKWTLI