Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_04210 |
Symbol | |
ID | 8394313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 500850 |
End bp | 502433 |
Gene Length | 1584 bp |
Protein Length | 527 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644985185 |
Product | phytoene dehydrogenase-like oxidoreductase |
Protein accession | YP_003142831 |
Protein GI | 257063159 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.507647 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.876413 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCAACA AGTATGATGT CATCGTCGCA GGCGGCGGCC ACAACGGCCT GATTACCGCG GCCTATCTGG CCAAGGCGGG CAAGAAGGTT CTGGTGGTCG AAGGCCAGGA GCATGCAGGC GGCGGCCTGC GCACCGAAGA GGTGGCGGCC CCCGGCTTCA AGAGCAACCT GGCGGCTGTC AGCCATGGCT TCATTCAGCC GAACCCGCTC ATCCGCAACG ACGAACTGGG CCTGCTCTCG AAGTTCGGCC TGGAGTACAT CTACCCCGAA AAGCAGACCG CCGTCATCTT CCCCGATGAC CGTTCGCTGA TCTTCTACCG CGACGTGGAC AAGACCTGCG AGTCCATCGC CCAGTTCTCC GAGCACGACG CCGAGGCATA CCACAAGTTC TACGCCATGG CGGAAAAGGC CCTCGAGATG ATGGTCGCCG GCATGTACAA CGGTCCCACG CCCACGTTCG GCGCGTTCTA TGCGGGTCTT GAAGGGTCCG AAGAAGGCCG CGACCTGCTG CGCATCCAGC TGGGCAGCAG CGACGCCTTC GTCAACGAGT GGTTCGAAGA CGACCACACC AAGGTCGCCT GCAACCGCTT CACCTCTGAG GGCATGTTCG ATCCTCGCGA GCAGGGCTCC GGCATGAACC TGCTCATCTT CGTCCCGCTG ACCCACAAGT ACGGAACCGC CATCCCCAAG GGCGGCTCGA TCGAGCTGAC CAACTCCATC ATCAGGTGCA TCGAAGCCAA CGGCGGCGAG ATCCGCACCA ACTCCTGGAT CAAGGAGTTC AAGGTCGCCA ACGGTACCTG CGAGGGCGTT GTGCTTGAGG ACGGCGAAGT GCTGCTGGCA AGCGACGCCG TGGTCACCAA CTTCAACATC AAACAGCTCG ACGAGACCAT GCTGGGCAAG GGCAATGTGA GCGATCGCTA TCTGACCAGC GTGAAGAACC TGCGTCCCCA GAGCTATCAG AACATGCTGC AGAGCATCGC TCTGAACGAG GCACCGATGT ACAAGGCCGG CGAAGACGCC TCCACGAGCT TCATGGTCGA GTTCGCCTCC GACACCATGG AAGGCTTCTA CCGTGAGTTC GACGCCTACA AGTACGGCGA GCCGTGGTTC ACGTCGCCGC TGTCCGTGAC GAGCACGTTG TGGGATCCGA GCCTGGCTCC CGAGGGCAAG CACTCCCTGT ACCTGTACAG CTACCAGCCC TACGAGCTGA AGGGCGGCGC GCAGCGCTGG GACGAAGGCA TGAAGGAAGA AGTGGCGGGC AAGGTTCTGG AGTTCATCCA GTCCCGCGCC ACCAACATGG GCCCCGAGAA CATCGTGGGT CAGTACACCA TGTGCCCGCG TGACTTCGAG CGCTGGAATC CGTCTTGGAT CGGCGGCAAC TTCTCCCACA TCGGCTGCTA CCTCAATCAG AACTACGGCA ACCGCCCGTT CCCCGAGGTG CAGGACAACC GCCTGCCGCT GGACCACATG TACATCTGCG GCCCCAGCGC GTTCCCGGGC GGCGGCGTCA TCGGCGGCGG CCGTGCGGTG GCACAGGTAG TCATGGAGGA CCTGGGCATC GACTTCTTCG ACGTTGTCGG TTAA
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Protein sequence | MSNKYDVIVA GGGHNGLITA AYLAKAGKKV LVVEGQEHAG GGLRTEEVAA PGFKSNLAAV SHGFIQPNPL IRNDELGLLS KFGLEYIYPE KQTAVIFPDD RSLIFYRDVD KTCESIAQFS EHDAEAYHKF YAMAEKALEM MVAGMYNGPT PTFGAFYAGL EGSEEGRDLL RIQLGSSDAF VNEWFEDDHT KVACNRFTSE GMFDPREQGS GMNLLIFVPL THKYGTAIPK GGSIELTNSI IRCIEANGGE IRTNSWIKEF KVANGTCEGV VLEDGEVLLA SDAVVTNFNI KQLDETMLGK GNVSDRYLTS VKNLRPQSYQ NMLQSIALNE APMYKAGEDA STSFMVEFAS DTMEGFYREF DAYKYGEPWF TSPLSVTSTL WDPSLAPEGK HSLYLYSYQP YELKGGAQRW DEGMKEEVAG KVLEFIQSRA TNMGPENIVG QYTMCPRDFE RWNPSWIGGN FSHIGCYLNQ NYGNRPFPEV QDNRLPLDHM YICGPSAFPG GGVIGGGRAV AQVVMEDLGI DFFDVVG
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