Gene Shel_04210 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_04210 
Symbol 
ID8394313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp500850 
End bp502433 
Gene Length1584 bp 
Protein Length527 aa 
Translation table11 
GC content62% 
IMG OID644985185 
Productphytoene dehydrogenase-like oxidoreductase 
Protein accessionYP_003142831 
Protein GI257063159 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1233] Phytoene dehydrogenase and related proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.507647 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.876413 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCAACA AGTATGATGT CATCGTCGCA GGCGGCGGCC ACAACGGCCT GATTACCGCG 
GCCTATCTGG CCAAGGCGGG CAAGAAGGTT CTGGTGGTCG AAGGCCAGGA GCATGCAGGC
GGCGGCCTGC GCACCGAAGA GGTGGCGGCC CCCGGCTTCA AGAGCAACCT GGCGGCTGTC
AGCCATGGCT TCATTCAGCC GAACCCGCTC ATCCGCAACG ACGAACTGGG CCTGCTCTCG
AAGTTCGGCC TGGAGTACAT CTACCCCGAA AAGCAGACCG CCGTCATCTT CCCCGATGAC
CGTTCGCTGA TCTTCTACCG CGACGTGGAC AAGACCTGCG AGTCCATCGC CCAGTTCTCC
GAGCACGACG CCGAGGCATA CCACAAGTTC TACGCCATGG CGGAAAAGGC CCTCGAGATG
ATGGTCGCCG GCATGTACAA CGGTCCCACG CCCACGTTCG GCGCGTTCTA TGCGGGTCTT
GAAGGGTCCG AAGAAGGCCG CGACCTGCTG CGCATCCAGC TGGGCAGCAG CGACGCCTTC
GTCAACGAGT GGTTCGAAGA CGACCACACC AAGGTCGCCT GCAACCGCTT CACCTCTGAG
GGCATGTTCG ATCCTCGCGA GCAGGGCTCC GGCATGAACC TGCTCATCTT CGTCCCGCTG
ACCCACAAGT ACGGAACCGC CATCCCCAAG GGCGGCTCGA TCGAGCTGAC CAACTCCATC
ATCAGGTGCA TCGAAGCCAA CGGCGGCGAG ATCCGCACCA ACTCCTGGAT CAAGGAGTTC
AAGGTCGCCA ACGGTACCTG CGAGGGCGTT GTGCTTGAGG ACGGCGAAGT GCTGCTGGCA
AGCGACGCCG TGGTCACCAA CTTCAACATC AAACAGCTCG ACGAGACCAT GCTGGGCAAG
GGCAATGTGA GCGATCGCTA TCTGACCAGC GTGAAGAACC TGCGTCCCCA GAGCTATCAG
AACATGCTGC AGAGCATCGC TCTGAACGAG GCACCGATGT ACAAGGCCGG CGAAGACGCC
TCCACGAGCT TCATGGTCGA GTTCGCCTCC GACACCATGG AAGGCTTCTA CCGTGAGTTC
GACGCCTACA AGTACGGCGA GCCGTGGTTC ACGTCGCCGC TGTCCGTGAC GAGCACGTTG
TGGGATCCGA GCCTGGCTCC CGAGGGCAAG CACTCCCTGT ACCTGTACAG CTACCAGCCC
TACGAGCTGA AGGGCGGCGC GCAGCGCTGG GACGAAGGCA TGAAGGAAGA AGTGGCGGGC
AAGGTTCTGG AGTTCATCCA GTCCCGCGCC ACCAACATGG GCCCCGAGAA CATCGTGGGT
CAGTACACCA TGTGCCCGCG TGACTTCGAG CGCTGGAATC CGTCTTGGAT CGGCGGCAAC
TTCTCCCACA TCGGCTGCTA CCTCAATCAG AACTACGGCA ACCGCCCGTT CCCCGAGGTG
CAGGACAACC GCCTGCCGCT GGACCACATG TACATCTGCG GCCCCAGCGC GTTCCCGGGC
GGCGGCGTCA TCGGCGGCGG CCGTGCGGTG GCACAGGTAG TCATGGAGGA CCTGGGCATC
GACTTCTTCG ACGTTGTCGG TTAA
 
Protein sequence
MSNKYDVIVA GGGHNGLITA AYLAKAGKKV LVVEGQEHAG GGLRTEEVAA PGFKSNLAAV 
SHGFIQPNPL IRNDELGLLS KFGLEYIYPE KQTAVIFPDD RSLIFYRDVD KTCESIAQFS
EHDAEAYHKF YAMAEKALEM MVAGMYNGPT PTFGAFYAGL EGSEEGRDLL RIQLGSSDAF
VNEWFEDDHT KVACNRFTSE GMFDPREQGS GMNLLIFVPL THKYGTAIPK GGSIELTNSI
IRCIEANGGE IRTNSWIKEF KVANGTCEGV VLEDGEVLLA SDAVVTNFNI KQLDETMLGK
GNVSDRYLTS VKNLRPQSYQ NMLQSIALNE APMYKAGEDA STSFMVEFAS DTMEGFYREF
DAYKYGEPWF TSPLSVTSTL WDPSLAPEGK HSLYLYSYQP YELKGGAQRW DEGMKEEVAG
KVLEFIQSRA TNMGPENIVG QYTMCPRDFE RWNPSWIGGN FSHIGCYLNQ NYGNRPFPEV
QDNRLPLDHM YICGPSAFPG GGVIGGGRAV AQVVMEDLGI DFFDVVG