| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_03620 |
|---|
| Symbol | |
|---|
| ID | 8394254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 434334 |
|---|
| End bp | 435026 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644985127 |
|---|
| Product | amino acid ABC transporter membrane protein |
|---|
| Protein accession | YP_003142773 |
|---|
| Protein GI | 257063101 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGGTT TCTTTTCGAT AGGCAGGCTC GTCGGAAACA TCCCCGCTCT GCTTAAGAGC
TTGCCTGTCA CATTCGAAAT CGTTGCAGTT GCGACCCTCT TCGGGGTCGC ACTGGCGATT
CTTCTGGCGC TGGCGCGCAT CAAGAAGGTT CCCGTCTTGA GCCAGCTTGC CCTGGTCTTC
ATCTCGTTCA TCCGGGGCAC GCCGCTGCTG GTGCAGATGT TCATCGTCTA TTACGGCATG
CCCATTCTGC TGTGGAACGT GTTTCGGGTA GACGTGAACG GATGGCAGCG CCTGACCTTT
GTCATGATTA CGTACTCGCT CAACCAGGGC GGATTCATGG CGGAGATCTT CCGTAGTGCC
ATCGAGTCGG TTCCTGCAAG CCAGACCGAG GCCGCATATT CGGTGGGCCT GTCGGGCGCC
CAGACGTTTT TGCGGATCGT GCTGCCGCAG GCGGTGCGGA CGGCCATCCC CAGTTTCAGC
GTGAACCTGG TCAGCCTGTT TCAGGACACG TCGCTGGCGT TTATGCTCGG CGTCGTCGAC
GTCATGGGCC GCGCGGAGCT CATTCAGAGC GCAACCCATC ATGTGCTCGA GTGCTACGTA
ATCATCACGG TCATATTCAT CGTGATCAGC ATTGCGCTGC GCATGTTCTT CATCTATCTG
GATAAACGGC TGCAGTACGG CAGAACCGTG TAA
|
|---|
| Protein sequence | MEGFFSIGRL VGNIPALLKS LPVTFEIVAV ATLFGVALAI LLALARIKKV PVLSQLALVF
ISFIRGTPLL VQMFIVYYGM PILLWNVFRV DVNGWQRLTF VMITYSLNQG GFMAEIFRSA
IESVPASQTE AAYSVGLSGA QTFLRIVLPQ AVRTAIPSFS VNLVSLFQDT SLAFMLGVVD
VMGRAELIQS ATHHVLECYV IITVIFIVIS IALRMFFIYL DKRLQYGRTV
|
|---|
| |