Gene Shel_03390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_03390 
Symbol 
ID8394231 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp410439 
End bp411923 
Gene Length1485 bp 
Protein Length494 aa 
Translation table11 
GC content67% 
IMG OID644985108 
Producttransposase 
Protein accessionYP_003142754 
Protein GI257063082 
COG category[L] Replication, recombination and repair 
COG ID[COG4584] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.309069 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCAGCA TGTCCAAAGT TCAGGATATA CGAAGGATGC GAAGGGAGGG TGAATCCATA 
GCGGGAATAT CGAGGGCGAC GGGCGTTTCG GAGCCGACCG TGCGCAAGTA CCTCAAGCCG
CAGGATCTCT CCCCGAAGAT GCCCGTGAGG GCGAAGGGGC CGTCGGTGAT GGACGAGTAC
TCGTCGATCG TCGACTCGTG GCTCGAGGCC GACCGTGGCG TTTGGCACAA GCAGCGCCAC
ACCGCCCAGC GCGTCTGGGA ACGGCTCGTC GAGGAGGAGG GAGCGACGAT GTCGTACAGC
ACCGTCAGGC GATACGTCAA GGATTGGAAG GACGCGCACA AAGGCGAAGG CGACGGGTTC
CTCGACCAGG TCGGGCTTCC CGCCGACATG CAGGTCGACT TCGGCCAGGC CGATTTCTAC
GTGGTCGGCG TGCGGACCCG TCTGCACCAC CTGGTCTGCG ACTTCCCGTT CTCCAACATG
GGGCTGGCGC AGGTTTTCCC CGGCGAGAAC GCCGAGTGCG CGTGCGAGGG CCTGATGGCC
GTGTTCTCCT ACATCGGCGG TGTTCCCAGG CGCATCATCT TCGACAACGC CACCGGCGTC
GGGCGCAAGA TGTGCGGCGT CATCAGGACC TCGAAGCTGT TCGCCGCGTT CGCCGCCCAC
TTCGGCTTCG AGTACGTGTT CTGCAACGCG GACGCGGGAA ACGAGAAGGG CGGCGTCGAG
AACAAGGTGG GCGCGCTGCG CCGCCGGCTG TTCGTCCCGC TGCCGCACTT CGACAACATC
CGGTCCTACA ACGCGCGGCT GCTGGACAAG TGCACGGAGC TCGCGGACAA GGAGCACTGC
GTCAAGGGCG AGCCGGAATC CCAGCTGTTC ATGGAGGACC GCTTCGCGCT GCTGCCGCTG
CCCGACGCGC CGTTCAAGGC GGTGAGCTGG CAGAGGATGA AGGCCGACAA GTACGGCAAC
GTCGTGCTCG ACGGGCGCCA CCGCTACTCG AGCGCGCCCG AGTTCGGCGG GCGCGAGCTC
ATCGTGGGCA GGTGCGCCTT CGACGTCGAG ATATACGATT CCGACGGCGC GCGCGTAGCG
ACGCACGCGC GCGCCTACGG CGACCGCCCC ACCGAGTCGG TCGAACCGGC GAGCCAGCTG
CCGCTGCTGT GCCGCAAGCC GAACGGCTGG CCGAACAGCC GCGTCAGGGC GTCGATGCCC
GACGACCTGC GGGAATGGGC CGATTCCCTC GACTCCGAGC CGCGCAAGGA GTTCCTGCGG
GTGCTGCGGG ACGTGACCGC CGAGAGCGGC TACGGGCCGG CCGTCGAGGC CGCCGCCCGC
ATCGTCGAGC TGGGCGGTGC GCCCGATAGG GCCTCGGTGA CCGTGCTCGC CGCCGGCATC
TGCAACGGCC GCGGAGTCGT GGACTACGCC GACCCCGTCG ACATGTCCGA CTACGACGCG
GCTTTCGCCG CGATCGGGGG CGGTTCCCAT GATCAGCAGA TGTGA
 
Protein sequence
MISMSKVQDI RRMRREGESI AGISRATGVS EPTVRKYLKP QDLSPKMPVR AKGPSVMDEY 
SSIVDSWLEA DRGVWHKQRH TAQRVWERLV EEEGATMSYS TVRRYVKDWK DAHKGEGDGF
LDQVGLPADM QVDFGQADFY VVGVRTRLHH LVCDFPFSNM GLAQVFPGEN AECACEGLMA
VFSYIGGVPR RIIFDNATGV GRKMCGVIRT SKLFAAFAAH FGFEYVFCNA DAGNEKGGVE
NKVGALRRRL FVPLPHFDNI RSYNARLLDK CTELADKEHC VKGEPESQLF MEDRFALLPL
PDAPFKAVSW QRMKADKYGN VVLDGRHRYS SAPEFGGREL IVGRCAFDVE IYDSDGARVA
THARAYGDRP TESVEPASQL PLLCRKPNGW PNSRVRASMP DDLREWADSL DSEPRKEFLR
VLRDVTAESG YGPAVEAAAR IVELGGAPDR ASVTVLAAGI CNGRGVVDYA DPVDMSDYDA
AFAAIGGGSH DQQM