Gene Shel_03230 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_03230 
Symbol 
ID8394215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp392732 
End bp393361 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content72% 
IMG OID644985093 
Producttransposase 
Protein accessionYP_003142739 
Protein GI257063067 
COG category[L] Replication, recombination and repair 
COG ID[COG2801] Transposase and inactivated derivatives 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.330594 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones34 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGGCGCA TCATGCGCGA GGAGGGCCTC ACGCCCGTCT GGGCCGGGGG GAAGCGGGCC 
CCGTGGAGCT CGTACGCCGG CGAGCCCACG CCGGCGCCGC CCAACCTGGC CGCGCGCAAC
TTCCGCTCGG CGCTGCCGAA CTTCCTGTGG GTCACCGACA TCACCGAGTT CCGCATCCCG
GCCGGCAAGT GCTACCTGTC GGCCGTGCGC GACTGCTTCG ACTCGTCGAT CTTGGCCTGG
CGCGTCGGGC CCCACCCCAC GGCCGACCTG GCCAACGCCT CGCTGGCGGA CGCCTGCGCG
CTGCTCGCCC CCGGCGAGGC GCCCGTGGTC CACTCCGACC GCGGCGGCCA CTACCGCTGG
CCGGGCTGGA TCGCGATCTG CGAGGAGTTC GGGCTGGTCA GGAGCATGTC GGCCAAGGGC
TGCAGCCCCG ACAACGCGGC CATGGAGGGC TTCTTCGGCC TGCTCAAGCG CGAGTTCTTC
CACGGGCGCG ACTGGCGCGG CTGGAGCCTG GTCGAGTTCA TGGACGCGCT CGACTGGTGG
ATCGTGGGGT ACAATGAGGA GAGGCAGTGC TCGACGCTGG GCCACATGAC GCCCGCGGAG
TTCCGCCGCA CGCTGGGAAG GGCCGCATAG
 
Protein sequence
MRRIMREEGL TPVWAGGKRA PWSSYAGEPT PAPPNLAARN FRSALPNFLW VTDITEFRIP 
AGKCYLSAVR DCFDSSILAW RVGPHPTADL ANASLADACA LLAPGEAPVV HSDRGGHYRW
PGWIAICEEF GLVRSMSAKG CSPDNAAMEG FFGLLKREFF HGRDWRGWSL VEFMDALDWW
IVGYNEERQC STLGHMTPAE FRRTLGRAA