Gene Shel_03070 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_03070 
Symbol 
ID8394199 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp375071 
End bp376012 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content51% 
IMG OID644985078 
Productmembrane protease subunit, stomatin/prohibitin 
Protein accessionYP_003142724 
Protein GI257063052 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0330] Membrane protease subunits, stomatin/prohibitin homologs 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGGGA AAAAAGAGCA CCTAAAAAAG TCGGAAGGCC AGATTTCGGA AGTGCCAGGT 
ATTGATGATA ACGAATCGAT TTACGATACT ACGAGTAATA AACGGGCATC TCGCGCGGGT
GTGTATGGAT TTGCAGTCCT GGTATTCGCT ATTTCTTTTC TAATTGTATT TGCCGTTCTG
TTCCCCGTGC TTCAGGCTTA TGCCGTATTA GCTGCCGCAG TAGTAGGCTT GCTGTGCTCG
TTCACATTTC GTGTTGCACC ACAATGGGAA CGAGCCGTGT TATTGCGCAT GGGGAAATTT
CATAAGGTTG CAGGACCTGG TTTGTATGTC GTCATTCCGC TTGTCGATTC GATAGCGATG
TTTGTCGACC AGCGAATGAT AACGTCTTCA TTTGTCGCGG AGCAAGCCCT GACTGCTGAT
CTGGTAAGCG TAGATATGGA CGCCGTACTG TATTGGATGG TTTTCGATTC TCGCAAGGCA
TGTATGGAGG TAGCCAACTT TCCTCAAGCC GTAATGCGGA GTGCACAGGC GGCTATTCGT
GATGCGGTGG GTCAGGTGAC TCTCGCTGAG CTTTCCGTGC GCCGTTGTCA ACTCGACCAC
GAGTTGGAAG AATTCATGGC GGATAAATGT GAAGAGTGGG GCATCAGCGT TCTTTCCGTG
GCGATTCGCG ATATCCGCAT ACCGAAGGAC CTGCAGCAGT CGCTTGCACG GGAGGCACAG
GCTGAGCGTG AGCGCGATGC TCGCGTGCTG TTGGCTGAAG TGGAGCGCGA CATTTCTGAG
ATGTACGTGG AGGCTGCACG CGTATACAAC CAAGAAGAAG GCGCCATGGA ACTGCGTGCC
ATGAATCTGA GCTATGAAAG TGCCCGTGAT GGCAAGGGAG TGCTCATTGC GCCGAGTAGT
TTGGCTGACG GCTTTGTTGA AAAAAGCCGG CTGAAGGGCT AA
 
Protein sequence
MIGKKEHLKK SEGQISEVPG IDDNESIYDT TSNKRASRAG VYGFAVLVFA ISFLIVFAVL 
FPVLQAYAVL AAAVVGLLCS FTFRVAPQWE RAVLLRMGKF HKVAGPGLYV VIPLVDSIAM
FVDQRMITSS FVAEQALTAD LVSVDMDAVL YWMVFDSRKA CMEVANFPQA VMRSAQAAIR
DAVGQVTLAE LSVRRCQLDH ELEEFMADKC EEWGISVLSV AIRDIRIPKD LQQSLAREAQ
AERERDARVL LAEVERDISE MYVEAARVYN QEEGAMELRA MNLSYESARD GKGVLIAPSS
LADGFVEKSR LKG