| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_02110 |
|---|
| Symbol | |
|---|
| ID | 8394103 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 260046 |
|---|
| End bp | 262466 |
|---|
| Gene Length | 2421 bp |
|---|
| Protein Length | 806 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644984983 |
|---|
| Product | anaerobic dehydrogenase, typically selenocysteine-containing |
|---|
| Protein accession | YP_003142630 |
|---|
| Protein GI | 257062958 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.292195 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGGAG AAAAGACCGT GAACCCGGGC ATCACCCGCC GCGGTTTCAT GAAGGGCGCT
GCCGCATTGG GCGCACTGGG CGTTACCGCC GGCGGCATTG CAACGGCAAC GAGCAGCCTG
GCGCCGACCA ACGCGCAGGC AGAATCCGAA GAGCACGTTG CCTACACGTA TCACCAATCA
CACTGCGGAA ACATGTGCGC ACTTGCCTGC ACCGTGCGTG ACGGTCGTCT CGTGTGCATC
GAGCCGAACA GTGCCATGGC CGAGCGCAGG TACAAGACGA TGTGCCTGAA GGGCGTATCT
GAAGTGCAGC ACATCTACAG CGACAAGCGA ATTCAGACTC CGCTCAAGCG CGTCGGCGAA
CGCGGAGCAG GCGAGTTCGA AGCCGTCAGC TGGGAAGAGG CCCTCGACGA CATCGTCTCG
CAGATCAAGG ACATCCAGCA GAGCTTCGGC AAGGACTCTG TGCTGGTCAC GACGTGTGCC
GAATGCGATG TTCCGTTCCT GGCCACGATT CTCGAGGCCC GCACCTGCGC GAACAACAAC
GGCATCGACA TCGGAACCGG CAACGGCCTT GACCCCGCCA CCGGTATGGG TTGGGGCTTC
GCCATGTCCG CACAGGAGCC TCGCGACTGG GTCAATTCCC GTCTGGTCCT CAACGTGGGC
AACAACTTCT GCGAATCCAG CCTGGCCAAC GCCCGTGTCA TGTTCGACGC GAAGGACGCC
GGCGCCCACG TGGTCACCGT TGACCCGCAT TTCTCCACCA CCGCCTGCAA GTCCGACGAG
TGGATTCCCA TCGAGGTCGG TACCGACGCG GCGCTGTTCC TGGGCATGAC CACCCATATT
CTTGACAACA ACCTGGGCGA CCAGGAGTTC ATGGCCAAGC ACACGTCGCT GCCCTTCCTG
ATCGACACGA AGACCGGCAT GCTGGTCCGC TCCGAGGAAG GCATCGTCGA CGAGGCCGCA
AAGGCCGAGG CCGAAGCTGC GGGCACCGAG TACATGCCCT TCTATCCGTT CCTGGTCATC
GACGAGGACG GCCAGAAGAA GCCCTACACC GAGGCTGCCA ATCCGCAGCT CACGGTGGAA
GGCACCTTCG ACGGGCAGCA GCTAGTGTCC GTGTACAGCA AGCTGTGCGA GAGCCAGAAG
GCCTATCCGA CCAGCTGGGC TGCGGAAGTC ACCGGCATTT CGCAGGAGCG CATCGAAGCG
CTGGCCGAAG AATACGCCGC TGGCCCCTCC TCCCTGTGCG TGGGCTGGGG CGGTTCCGAC
AAGCTGAGCA ACGCAGACAT CACGGGCCAC GCAGCTGCCG TCCTGGTTGC CGTCACGGGC
AACATCGGCA AGCCCGGCGC AGGCGTCGGC GTGTATGTCG GCGCCCAGTA CGCCGGCTAT
GCCGCCGGGT TCGGCGAGTG GGCCATCCCC GAGAAGTACG GCCTCATGCC CGGTCCCGCC
GACCTGCAGA TGCGTGAGCT TCGCCAGACC GACATAGTGC ATGCCATCGT TGCGGTGGGC
GACCTTTTGG CCCAGAAGGT GGGCAACATG AAGCTCACCG AGGAATGGAC GAAGACCATC
GACCTCATCG TGACGGCCGA CGTGTACTTC ACCGAGGGCG CCAAGTGGGC CGACTACGTT
CTGCCGCTGA CCAGCCGCTT CGAATACGAC GCTGAGGTCG GCAATGTGAA GAACGGTTAC
AACCACATCT GCCTGCAGGA AAAGGTGCTC GATCCACTGT TCGAGGCCAA GACCGACCTG
TGGTTCCAAC GCGAACTCGC CAAGCGTCTG GGTTACGAAG ACGCCCTGCC TGAAACGGCC
GACGAGCGCG TCGCAGCCAT CATGGCCGGC TGCACCGAGA ACGTCACGCT GGAACAGCTG
AAGGAGAACC AGGGCGTGTG GCCCATCACG GGTATCGAGA ACCCGCGCCT GGTCGCCACC
GACTACGCGT TCTACACCGA GTCCGGCAAC ATGGAGGTCT ACTACCAGAA TCTGGTCGAC
TTCAACCAGG CCCTTCCCCA ATGGGAAGAG AACATCGAGG CCTACCCGGG CAACCCCGAG
AGGGAGAAGT ACCCGCTGCA GCTCACCAAC ACGCGCACGC GCTTCCGCAT TCACAACCAG
TTCAACGACT CCGCTTGGCT GGCTCAGTAC TACACGCCGA CGGTCCATGT GAACCCCGTC
GACCTGGAGG CCCAGGGCAT CAAGACCGGC GACACCGTGC GCCTGTTCAA CGACCGCGGC
GAGATCAAGG TGGCTGTGGC CGCCAATGAA GCAATCCGTC CGGGTTCCGC CCGCCTGTAC
GAAGCCACGA CGGCCGACTA CACCGTTGCC GGCAACATGC AGGATCTGAC CAACGACACG
CCGATCGAGC GCGGCGCCGC CCTGATGATG GGCCCGGTAG CCCCGTTCAG CGACACCATC
GTCGGCATCG AGAAGGCATA G
|
|---|
| Protein sequence | MSGEKTVNPG ITRRGFMKGA AALGALGVTA GGIATATSSL APTNAQAESE EHVAYTYHQS
HCGNMCALAC TVRDGRLVCI EPNSAMAERR YKTMCLKGVS EVQHIYSDKR IQTPLKRVGE
RGAGEFEAVS WEEALDDIVS QIKDIQQSFG KDSVLVTTCA ECDVPFLATI LEARTCANNN
GIDIGTGNGL DPATGMGWGF AMSAQEPRDW VNSRLVLNVG NNFCESSLAN ARVMFDAKDA
GAHVVTVDPH FSTTACKSDE WIPIEVGTDA ALFLGMTTHI LDNNLGDQEF MAKHTSLPFL
IDTKTGMLVR SEEGIVDEAA KAEAEAAGTE YMPFYPFLVI DEDGQKKPYT EAANPQLTVE
GTFDGQQLVS VYSKLCESQK AYPTSWAAEV TGISQERIEA LAEEYAAGPS SLCVGWGGSD
KLSNADITGH AAAVLVAVTG NIGKPGAGVG VYVGAQYAGY AAGFGEWAIP EKYGLMPGPA
DLQMRELRQT DIVHAIVAVG DLLAQKVGNM KLTEEWTKTI DLIVTADVYF TEGAKWADYV
LPLTSRFEYD AEVGNVKNGY NHICLQEKVL DPLFEAKTDL WFQRELAKRL GYEDALPETA
DERVAAIMAG CTENVTLEQL KENQGVWPIT GIENPRLVAT DYAFYTESGN MEVYYQNLVD
FNQALPQWEE NIEAYPGNPE REKYPLQLTN TRTRFRIHNQ FNDSAWLAQY YTPTVHVNPV
DLEAQGIKTG DTVRLFNDRG EIKVAVAANE AIRPGSARLY EATTADYTVA GNMQDLTNDT
PIERGAALMM GPVAPFSDTI VGIEKA
|
|---|
| |