| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_01970 |
|---|
| Symbol | |
|---|
| ID | 8394089 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 245103 |
|---|
| End bp | 246971 |
|---|
| Gene Length | 1869 bp |
|---|
| Protein Length | 622 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644984969 |
|---|
| Product | acetolactate synthase, large subunit |
|---|
| Protein accession | YP_003142616 |
|---|
| Protein GI | 257062944 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | [TIGR00118] acetolactate synthase, large subunit, biosynthetic type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00241919 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAACT TGCAAGAAGA CCTCGAGCGC AAGAGCCTGG CCATTGCCGG CAAGCCGTTC
GGTCCGGGCA GCGCCACCGA GCACGAGGGG CAGCGCATGA ACGGCGCCCA GGCCGTGGTC
GCGTCGCTTG AGGCGGAAGG CGTGGAGACC ATCTTCGGGT ACCCTGGAGG CACGGTCATC
GACATCTACG ACGCGCTGTA CGATTCCAAA ATCAAACACG TGCTGGCCCG CCATGAGCAG
GGTGCCTGCC ACATGGCCGA CGGATACGCG CGCTCCACGG GGCGTCCCGG CGTGTGCCTG
GTGACCAGCG GTCCTGGCGC CACCAACGTG GTGACCGCCA TCGCCACGGC GTTTCTGGAT
TCCATCCCGC TCATCGTCAT CACCGGTCAG GTGAAGCGCC CCGTCATCGG CACCGACGCC
TTCCAAGAGG CCGACACCGT TGGCATCACC ATGCCCATCG TGAAGCACAG CTACCTTCTG
ACCAGCACCG ACGACTTGAC GAAAACGTTC CGCGAGGCCT TCTACATCGC ATCGACGGGC
CGTCCGGGCC CGGTGCTTAT CGACGTGCCT TCCGATATCT CCACCGCCGA GATGGTGTTT
CATTATCCCG ACGATGTGAA CCTGCCCAGC TACAAACCCA CCTACAAAGG CAACGCTCGC
CAGATCAAGC AGACGGTTTC CGCCCTTAAG GAAGCGAAGC GACCGCTGCT GTACGTGGGC
GGCGGCGTGG CGCTGTCCTT CGCCGAGAAG GAACTGGCCG ATCTGGCGCA CATGCTGCGC
ATCCCCGTGG TCACCACGCT TATGGCCGTG GGCGTCATGG ATCCCGATGA CGAGCTCAAC
CTGGGTGCGG TGGGCATGCA CGGCTCCCGT TACGCCAACA AGGCCATGAA CGATTGCGAC
CTGCTGATTG CCGTGGGCGC ACGCTTCTCG GAGCGGGTGA CCGGACGTAT CGACACCTTC
AACCAGGGGG CCAAGGTCAT TCATATCGAT ATCGATCCGG CCGAAATCGG CAAGGTACGC
GCCGCGGAGA TCCCCATCGT GGGCGACGCG CAGATCGTGC TTGCCACCCT TGCTGGACAG
GCTGAAAAGC AGAACGTGGG CCCTGTTGGC GAAGCCTTCG CCCAACAGTG TTTCGAGTGG
CGTGAACGCT GGCCGCTGTA CGACCGCGAA CTTGCCGCCA AGGAGGGCCA GGGCCGCATC
GTGCCCGAGG CGTCGCTGCT CATGCTGTCC GGCAAGCTGG ACCGCGACAA CTCCATCGTC
GTCACGGACG TGGGGCAGCA TCAGATGTGG GCCTTCCAGT TCATCAAGCG TAACAACCCC
GGCACCTTCC TCACGTCGGG CGGCCTGGGC ACCATGGGCT ACGGCCTGCC CGCGGCCATC
GGCGCGCAGA TCGTCAATCC CGACCAGCAG GTGGTGCTGG TGACCGGCGA CGGATCATTC
CAGATGTGCA TTCAGGAGAT GGCCACGGCC ACCATCAACA ACGCGCCGGT CAAGGTGGTT
ATTTTGGACA ACCGCGCGCT GGGTATGGTG CACCAGTGGC AGAAGCTGTT CTACAACGGG
CGCTATTCAG CCACGGTGCT GGACCCCGTT CCCGATTTCG TGAAGCTGGC CGAAGCCTAC
GGTTGGCAGG GCGAGCGCAT CGTCGACCCC GATGAGCTGT CCGCGGCGTA CGACCGCATG
CTGGCCGCCG AGGGTCCGTA CCTGCTTGAC GTGGACATTC GCGCCGATAT GAACGTGTAT
CCCATGGTGC CTGCCGGCGC TCCCATGAGC AAGCAGTTCG GCGCCATCGA CATGGACGCG
GGCGGCACGC GCATCAGGTA TGACGACGTC AATCCGCCCA TCGGCTCCGA TGACGAGATG
GAGGCTTAA
|
|---|
| Protein sequence | MMNLQEDLER KSLAIAGKPF GPGSATEHEG QRMNGAQAVV ASLEAEGVET IFGYPGGTVI
DIYDALYDSK IKHVLARHEQ GACHMADGYA RSTGRPGVCL VTSGPGATNV VTAIATAFLD
SIPLIVITGQ VKRPVIGTDA FQEADTVGIT MPIVKHSYLL TSTDDLTKTF REAFYIASTG
RPGPVLIDVP SDISTAEMVF HYPDDVNLPS YKPTYKGNAR QIKQTVSALK EAKRPLLYVG
GGVALSFAEK ELADLAHMLR IPVVTTLMAV GVMDPDDELN LGAVGMHGSR YANKAMNDCD
LLIAVGARFS ERVTGRIDTF NQGAKVIHID IDPAEIGKVR AAEIPIVGDA QIVLATLAGQ
AEKQNVGPVG EAFAQQCFEW RERWPLYDRE LAAKEGQGRI VPEASLLMLS GKLDRDNSIV
VTDVGQHQMW AFQFIKRNNP GTFLTSGGLG TMGYGLPAAI GAQIVNPDQQ VVLVTGDGSF
QMCIQEMATA TINNAPVKVV ILDNRALGMV HQWQKLFYNG RYSATVLDPV PDFVKLAEAY
GWQGERIVDP DELSAAYDRM LAAEGPYLLD VDIRADMNVY PMVPAGAPMS KQFGAIDMDA
GGTRIRYDDV NPPIGSDDEM EA
|
|---|
| |