Gene Shel_01860 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_01860 
Symbol 
ID8394078 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp228277 
End bp229404 
Gene Length1128 bp 
Protein Length375 aa 
Translation table11 
GC content63% 
IMG OID644984959 
Producturoporphyrinogen-III decarboxylase 
Protein accessionYP_003142606 
Protein GI257062934 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0407] Uroporphyrinogen-III decarboxylase 
TIGRFAM ID[TIGR01463] methyltransferase, MtaA/CmuA family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGGTAGATA TAGAGAAATA CCTGCACGGG TTGGAGGTGA AACCCGACGA GCTGACGGCG 
CTGGAGCGCG ACCGCCTGTA CAGCCAGGGA AAACCGGTCG ACCGCATCCC CTGCGTGCTT
GACACGGGCG AGACCATGGC GCCCCTCATG GGCATGTCCA TCGCAGATTA CTACCATTCC
GCCGAAAAGA TGTGCGACCT GGAGGTGTAC CTGCAGGAGC ACTTCCATTC CGACGGCGCC
GGGCTTTCCA CCACGCTGCG CGGCATGGCC GAAGCCATGG GTTCGGAAAT CGCCTACTTC
GACAACAACG TGGCGCAGCT CAAGACGCCG GCCCTCAAGA GCCTCGACGA GGTGGGTAAG
GCGAAGCTCG TCGACGTCGA CAAGGACGGA CGCCTTCCCA TCATCTTGAA GGCATTGGCC
ATGGTGAAGG AAAAGCTGGG CGCCACGGTG CCCGTCGGCG GCACCGTGAC CGGGCCGTTC
ACCATCGCGG CCATGGTCGT GGGCACGCAA ACTCTGCTCA AGGGCCTGCG CAAGCACCCA
GACCAGGTAA AAGAGCTGAT GGAAGTCATC GTCGAGAACA ACAACCGCTA CATCGAGCGC
CTGCTGGACA TCGGTGTGGG CATCGGGTTC GCCGACCCTG TCAGCTCGTC GTCCATCATT
CGCGCCGAAC AGTACCGCGA ATTCTCGCTG CCCTACCTGA AGAAGAACGT CGACTTCATC
AAGAGCCGTG GCGGCGGGTG CGGCCTGCAC ATCTGCGGCA AAAGCCGCGC GTTATGGGAC
GACATCATAA CCAGCGGCAT CGGCACCTTC GGCCCCGACA ACGTGGAGGA CATGGCCGAA
GCGAAGGAGG TCTTAGGGCC CCACATGTGC ATCCAGGGAA ACGTTCCTCC CGTGGAGGTC
ATGCTTTACG GTACGCCGTA CGACGTGCTC AGGTCGGCGC GGGAATCCAT CCGCAAGGCC
TACGACTCGC CCCGCGGCTT CGTGCTGACG TCCGGATGCC AGATGCCCGT GGGCACGCCC
CGCGAGAACA TGACCGCGCT TATGGACGCC GCCCGGATCT TCGGCCGCTG GCCCGTGGAT
CCGTCGCTGC TCGAAGGCGA CGAGGACGAG TCGTTGCCCG TGCAATAG
 
Protein sequence
MVDIEKYLHG LEVKPDELTA LERDRLYSQG KPVDRIPCVL DTGETMAPLM GMSIADYYHS 
AEKMCDLEVY LQEHFHSDGA GLSTTLRGMA EAMGSEIAYF DNNVAQLKTP ALKSLDEVGK
AKLVDVDKDG RLPIILKALA MVKEKLGATV PVGGTVTGPF TIAAMVVGTQ TLLKGLRKHP
DQVKELMEVI VENNNRYIER LLDIGVGIGF ADPVSSSSII RAEQYREFSL PYLKKNVDFI
KSRGGGCGLH ICGKSRALWD DIITSGIGTF GPDNVEDMAE AKEVLGPHMC IQGNVPPVEV
MLYGTPYDVL RSARESIRKA YDSPRGFVLT SGCQMPVGTP RENMTALMDA ARIFGRWPVD
PSLLEGDEDE SLPVQ