Gene Shel_01400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_01400 
Symbol 
ID8394032 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp172354 
End bp173880 
Gene Length1527 bp 
Protein Length508 aa 
Translation table11 
GC content60% 
IMG OID644984912 
ProductTrk-type K+ transport system, membrane component 
Protein accessionYP_003142562 
Protein GI257062890 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGGCAGA AGTTCACATT CCGAGACCTT CGCGTTATCG TGAAGTTCCT GGGCGTGCTG 
GTTACGTTTT CGGCAGGAGC CATGTGCGTT CCCCTGGTCG TGGCGCTGGC CATGCGCGAA
TGGAGTTCGG CGACGCATTA CATCGTGGGC ATCGGCGTGG CGCTGTGCAT GGGTTCGCTC
ATGCGGCTTG CTTACGTAAA GAAAGCGAAG CTCACCACGC AGCAGGCGCT GGCCGTCACA
GGTTTCGCCT GGCTGCTGTT GGCCGTAACT GGCAGCGTGC CGCTGGCGTT GTCTGGGCAT
TTCGGCAGCT ACCTGGATGC GTTTTTCGAG AGCATGAGCT CGTGGACCAC GACGGGCGCG
TCGCTGGCGC AGGATGTGGA CCACATGTCG TTTGCGGACA ACACCTGGCG GTTCACCATG
CAATGCATCG GCGGCCAAGG CGTGGTCGTT ATCGCGCTGT CGTTGGGCTT GTTCGGGCGC
GCGGTGGATT CGTCGCTGTA CGAATCCGAG GGCCGCAGCG AGCACGTCAT CCCCAACATC
ATGCAGACGA CCCGGTTCAT CGTGAAGCTT TCCGCCGTGG TGGGCGTGGC CGGATTGATC
GTGTTCACAA TCCTGTGCCT GGCCATCGGC ATGGAGCCCG TGCGTGCGTT CTTCAACGGT
CTGTGGCTTT CGGTAGCGTC GTTCAATACC GGCGGCATGA CGTCGATGAG CCCGGGCATC
AACTATTACC ACTCGCTTGC CATCGAGCTG GTGGTCATCC TTCTGGCCAT GTACGGTTCC
ATCAACTTCA CGCTGCACGG TGAAATCTGG AAGGGCCACA TCGTGCCGTT CTTCCAGGAC
ATCGAGGTGA AAACCAGCGT CGTCTGGCTG ACCGTCGCCA CTGCCGCTTT TGTGGCAGCG
TTGTGCGCGG CGGGCGCGTA TGCCGATTAC CCCACGCTGG TGCGGCGCGG CATCTTCACC
ATTCTGGCCG CATTCACGTC GTCGGGCTTC CAGACCATCA GCCCCAACCA GCTGACGACG
GTCGTGTCGT CGGGCGCGCT CATCATCATC GTGTTCGTCA TGATCATCGG CGGTTCCGCG
GGCAGCACCT CGGGCGGTAT CAAGATCCTG CGCGTCGGCG TGCTGGGTAA GGAAGTGGTC
GCCTACATCA AAGACCTGCT GGCTCCGCCG TCAGCCCGCC AGGTGGTCAC CTACTACCAT
GTGGGTCGCC GTCCGCTGGC ATATAGCCTG GTCAGGGCTA ACCTTGCCGT GTTCGTGCTC
TATGTCGGGG CGTTTTTGAT CACAACCATC GCAACCGTGG CGTACGGCTA CGACGCCATG
CCTTCCATTT TCGAATCGGT GTCGATGGTT TCCAACATCG GCATGACCGC GGGCATTATC
GAACCCGACA TGCCCGTCGT GCTGAAGTTC GTGTACATGT TCGACATGTG GGCAGGCCGT
CTCGAGTGGG TTACCCTTAT CGCCCTCGCC GTATCCGTGA TCATGTCCTT CAAGCCTCGA
AAGAAGGTGA AGGGCCGTGT CTACTAA
 
Protein sequence
MWQKFTFRDL RVIVKFLGVL VTFSAGAMCV PLVVALAMRE WSSATHYIVG IGVALCMGSL 
MRLAYVKKAK LTTQQALAVT GFAWLLLAVT GSVPLALSGH FGSYLDAFFE SMSSWTTTGA
SLAQDVDHMS FADNTWRFTM QCIGGQGVVV IALSLGLFGR AVDSSLYESE GRSEHVIPNI
MQTTRFIVKL SAVVGVAGLI VFTILCLAIG MEPVRAFFNG LWLSVASFNT GGMTSMSPGI
NYYHSLAIEL VVILLAMYGS INFTLHGEIW KGHIVPFFQD IEVKTSVVWL TVATAAFVAA
LCAAGAYADY PTLVRRGIFT ILAAFTSSGF QTISPNQLTT VVSSGALIII VFVMIIGGSA
GSTSGGIKIL RVGVLGKEVV AYIKDLLAPP SARQVVTYYH VGRRPLAYSL VRANLAVFVL
YVGAFLITTI ATVAYGYDAM PSIFESVSMV SNIGMTAGII EPDMPVVLKF VYMFDMWAGR
LEWVTLIALA VSVIMSFKPR KKVKGRVY