Gene Shel_00890 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_00890 
Symbol 
ID8393981 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp118327 
End bp119232 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content65% 
IMG OID644984862 
ProductCAAX amino terminal protease family 
Protein accessionYP_003142512 
Protein GI257062840 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.685827 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAGCGAC TTGCCGTCTA TCTTGCCGTA ACCTTCGGCC TTACCTGGGG CTTGCTGATT 
CCTGCGGGAA TCGCCCTGGG CACCTTCGAA CACGGCGAGT CTTCCTCCCT GGTCATGGTC
GTTCTCATCG CCGCGAGCAT GTTCTTTCCC CTGGTGGGAG CGCTTGCCGC CAACGCCGCC
AGCGGAAGCG AAGGCCGCAT CGACCTGGGC CTTAAGCTGC GGCTCGAAGG CAACCTACGG
CTCTATCTGG CAGCGTGGTT CGCCCCAGCC GTGTTCACGC TGCTCGGGTG CGTCGTGTTC
TTCGTCCTGA ACCCCAGCCT GTTCGATCCG TCCATGGAGT CGTTTCTGGC CGCCGACGCA
GCGGCGGCGG GCGCATCCTC CGACCAGCTG GCCGCCCAGA TGCCGCCGGC CCCCGTTCTT
CTCACGAGTT CCCTTTTTGC GGCGCTGACC ATCGCCCCGT TCATCAACGC GATTCCTGCA
GCGGGCGAGG AAATCGGCTG GCGCGGCTTG CTGCTCCCGA CGCTGTGCGA GCGCCTGTCC
GAACGCGGAG CCGTGCTGGT TTCGGGCGTG ATATGGGGTC TGTGGCATGC GCCGGTCATT
GCCATGGGGC ACAACTATGG TATGGACTAC GCAGGGTTTC CCCTGGTAGG GATCCTGGTT
ATGATCGTTG CCTGCACAGC CATCGGATGT GCGTTGGGTT ACCTGCGCCT GAATACCGGA
AGCATGTGGC CTTGCGCGCT GGCCCACGGA GCCATCAACG CGATTGCGTC CACCGGGGTT
GCGTTCTGCA CCGTCGGCCC CGGCCCGCTG GGACCGTCCC CGTTGGGACT GGTCGCGGGC
ATCCCGATGA TGGCGCTCGG CGTCGTCTGC TGGCTGCAGC TCTCCCCCGC CAAACCTCAG
CCCTAG
 
Protein sequence
MKRLAVYLAV TFGLTWGLLI PAGIALGTFE HGESSSLVMV VLIAASMFFP LVGALAANAA 
SGSEGRIDLG LKLRLEGNLR LYLAAWFAPA VFTLLGCVVF FVLNPSLFDP SMESFLAADA
AAAGASSDQL AAQMPPAPVL LTSSLFAALT IAPFINAIPA AGEEIGWRGL LLPTLCERLS
ERGAVLVSGV IWGLWHAPVI AMGHNYGMDY AGFPLVGILV MIVACTAIGC ALGYLRLNTG
SMWPCALAHG AINAIASTGV AFCTVGPGPL GPSPLGLVAG IPMMALGVVC WLQLSPAKPQ
P