Gene Shel_00390 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShel_00390 
Symbol 
ID8393931 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSlackia heliotrinireducens DSM 20476 
KingdomBacteria 
Replicon accessionNC_013165 
Strand
Start bp48180 
End bp49475 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content62% 
IMG OID644984813 
Productputative regulator of cell autolysis 
Protein accessionYP_003142463 
Protein GI257062791 
COG category[T] Signal transduction mechanisms 
COG ID[COG3275] Putative regulator of cell autolysis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.848872 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCCGA AGTCCAACTA TTCGCGTTTT CTCGAACTGA TTCTGCTGAT TATGGCCGCA 
ACGGCTGCGG GCGGCCTGAT TTACGCCCTG GGTAAACCTA ACCAGTCGAC GGCCATGACC
TTCGCCTCAG GCCTTCTGTT CACCATGTCG CTTATGGCGT TCATCTACGT GCAGCTGAAT
CCCGACGCGG TGCGCGCCCG CCAATCCGAC ACCACGCTCA AGCTGGCTTC CGAAATGCTG
TCCTACGTGC AGGACGGCAT GAGTGCCGAA TCGGCGCAGG CCATTTGCGG GCTGCTGCTG
CCGGCGACCA ATGCGAAGGC CGTGGCCATT ACCAATCGCG AGGTCATTTT AGGATACGTG
GGTGAGGAAG AGGGTCAGAA CGAAAGCGGT TCGCCCGTGC GCACGAAGGC GACCCATGCC
ACGCTGACCG ACGGCAAGAC CCGCGTGCTC ACCTCGGCGG AGGAGATCGG CTTCCCTCCG
ACGGTGAAGA ATCTGAGCGC CGGCATCGTG GTGCCCCTGC ACCGCGGCGA GATTATCGTG
GGCACGCTGA AGTTCTACTA CCGCCGAGCG TCGTCGATCA ACGAGACCCA GCTGGCGCTG
GCCGAGGGCC TGGCCGAGCT TCTGTCCACC CAGATTGCCG CCGTCGAGAT GGAAAACCAG
CGCAAGTTGG CCACCACCAT GGAGCTCAAG GCGCTGCAAT CCCAGATCAA CCCGCATTTC
CTGTTCAACA CCATCAACAC CATCGCGGCG CTCACCCGAA CCGATCCCGC TCGGGCGCGC
GTGCTGCTGC GCGAGTTCGC CGTGTTCTAC CGTCGAACGT TGGAAAACTC CGATGACTTG
CTGGAGGTTA CCCGCGAGCT CGACCAGACC CAGCGTTACT TCCTGTTCGA GGTGGCGCGC
TTCGGGGAGG ACCGGCTGTC GCTGGACGTG GAGATTGAGG ACGGCCTGGA AGACATCCTG
GTGCCGTCGT TTTTGGTTCA GCCCCTGGTC GAAAACGCGG TCAAACACGC CATGCCGCAG
GAGGGCATGC TCAACATCGA AGTGGACGTG TACAGCGAAG GCGACGACGT CATCATCTCC
GTCAAGGACG ACGGCATCGG CATGGACGAA AGCCAGAAGC GCAAGATGCT CGAGGCGCCT
GAGGTGAAAG GCACGGGCAT CGCCATGGGT AACATCAGGG ACCGTCTGCG CGGCTACTAC
GGCGAAGACG CCCACATGGA AGTGGAATCG TCGGGCGGTA CCGGCACCAC CGTGCGTCTC
GTGCTGAGCG GAGCCGCCGA CGACGGCGAG ATCTAG
 
Protein sequence
MTPKSNYSRF LELILLIMAA TAAGGLIYAL GKPNQSTAMT FASGLLFTMS LMAFIYVQLN 
PDAVRARQSD TTLKLASEML SYVQDGMSAE SAQAICGLLL PATNAKAVAI TNREVILGYV
GEEEGQNESG SPVRTKATHA TLTDGKTRVL TSAEEIGFPP TVKNLSAGIV VPLHRGEIIV
GTLKFYYRRA SSINETQLAL AEGLAELLST QIAAVEMENQ RKLATTMELK ALQSQINPHF
LFNTINTIAA LTRTDPARAR VLLREFAVFY RRTLENSDDL LEVTRELDQT QRYFLFEVAR
FGEDRLSLDV EIEDGLEDIL VPSFLVQPLV ENAVKHAMPQ EGMLNIEVDV YSEGDDVIIS
VKDDGIGMDE SQKRKMLEAP EVKGTGIAMG NIRDRLRGYY GEDAHMEVES SGGTGTTVRL
VLSGAADDGE I