| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shel_00180 |
|---|
| Symbol | |
|---|
| ID | 8393910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Slackia heliotrinireducens DSM 20476 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013165 |
|---|
| Strand | + |
|---|
| Start bp | 25905 |
|---|
| End bp | 26945 |
|---|
| Gene Length | 1041 bp |
|---|
| Protein Length | 346 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644984793 |
|---|
| Product | cytochrome d oxidase cyd, subunit II |
|---|
| Protein accession | YP_003142443 |
|---|
| Protein GI | 257062771 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1294] Cytochrome bd-type quinol oxidase, subunit 2 |
|---|
| TIGRFAM ID | [TIGR00203] cytochrome d oxidase, subunit II (cydB) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.627733 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATTT GGGCAATTAT CTGGTATGTC CTGGTGTTCG TGCTCATCGC CGGATACTTC
ATTCTTGACG GTTTTGATCT GGGCGCGGGC GTCCTAAGTC CGTTTATCGC CAAAAACGAC
GAAGAGAAAC TTACGCTCAT GAAGGCCATC GGACCTGTGT GGGACGGTAA CGAGGTGTGG
CTGCTCACGG GCGGCGGCGC GCTGTTTGCC GCATTTGCCC CAGCGTACGC GACCACCTTC
TCCGGGTTCT ACCTGGCCAT CATCCTGGTG CTGATGGGCC TGATCATTCG CGCGGTGTCC
GTCGAGTTCG CAGCCCACGA TCCCGCGTGG CGCAAGCTGT GGTTCGTGCT GTTCTTCATC
GGATCGCTGC TGCCGGCTCT GCTCTACGGC GTGGCTGTCG GCAACATCTA CGCCGGCATT
CCCATGGACG CTGCCGGCAA CTACATCGGT GTCCCGCTGA TCGGGCTGGT CACCCCGTTC
ACGCTGCTTT GCGGCTTGCT GGGTCTGACC ATGTGCATCC TGCAGGGTGC TTGCTGGCTG
TCCGTCAAGG CCCCGCTGGA AGGCGAGCTT CTGGCTCGCG CCCGCGGCCT GCGCCGCCCC
GTGGCCATCG TAGCCATCGT GCTGTTCGCC CTGGTTACCT TGTATGCGCT GTTCATCATT
AAGCCTGAGC TGGCCGCTGG CCTGGGCGTC CTGCGCATCC TGTTCGCGCT GGTCGTCGTA
GCGGCTCTGG TTTTCGTGTT GCTGAAGGCC GTACAGCCCG AGGCTTCCGA CCTGACCATC
TTCCTGGTTG CGTCCGTAGC ATGCTTCGCG CTGGTTGGTC TGCTGGCATC CAGTATGTTC
CCGACCTTTG TGGTGTCCGG CTCCGGCGAC CCGCTGACCC CGTTCATGAC CGCCACCGAA
GGTGCTGCGA TTACCGCCGC CGACGCGTCC GGCGACCTGA CCCTGAAGTG GATGTTCGGC
ATCACCTGCG TGGCTCTGCC GCTGGTATTG CTGTATCACT TCCTGGTGTA CCGCACCTTC
GCCGGCCGCT TGGCAGACTA A
|
|---|
| Protein sequence | MSIWAIIWYV LVFVLIAGYF ILDGFDLGAG VLSPFIAKND EEKLTLMKAI GPVWDGNEVW
LLTGGGALFA AFAPAYATTF SGFYLAIILV LMGLIIRAVS VEFAAHDPAW RKLWFVLFFI
GSLLPALLYG VAVGNIYAGI PMDAAGNYIG VPLIGLVTPF TLLCGLLGLT MCILQGACWL
SVKAPLEGEL LARARGLRRP VAIVAIVLFA LVTLYALFII KPELAAGLGV LRILFALVVV
AALVFVLLKA VQPEASDLTI FLVASVACFA LVGLLASSMF PTFVVSGSGD PLTPFMTATE
GAAITAADAS GDLTLKWMFG ITCVALPLVL LYHFLVYRTF AGRLAD
|
|---|
| |