Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shel_00060 |
Symbol | |
ID | 8393898 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Slackia heliotrinireducens DSM 20476 |
Kingdom | Bacteria |
Replicon accession | NC_013165 |
Strand | + |
Start bp | 6635 |
End bp | 9151 |
Gene Length | 2517 bp |
Protein Length | 838 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644984781 |
Product | DNA gyrase subunit A |
Protein accession | YP_003142432 |
Protein GI | 257062760 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0188] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit |
TIGRFAM ID | [TIGR01063] DNA gyrase, A subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.120033 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0325774 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | GTGTCTGATA AAGAGATTCT AGAGGCGGCG GATTCCGGCA ACACCGGTGT TCAGACCGCC GAACTCGGCC GCGAGATGCG CACCTCGTTC CTCGAGTATT CGATGAGCGT TATCGTCTCC CGCGCGCTGC CTGACGTCCG CGACGGCTTG AAGCCTGTTC ACCGCCGCAT CCTGTACGCC ATGTACGACT CCGGCATCAC GCCGAACAAG CCTCATAGCA AGTCTGCCCG TACCGTCGGC GACGTCATTG GTAAGTACCA CCCGCACGGC GACTCCGCGG TGTACGACGC CATGGTGCGT CTGGCGCAGG ACTTCAACAT GCGCGTTCCT CTGGTTGACG GCCACGGCAA CTTCGGTTCC ATCGACGGCG ACTCCGCTGC AGCCATGCGT TACACTGAGG CCCGTCTGGC CAAGCCGGCC ATGGAGCTTT TGGCCGACCT GGGTAAGGAA ACCGTCGATT GGGTTCCCAA CTACGACGAA AGCCTGCAGG AACCTTCCGT TCTTCCGGCC CGTTTCCCGA ACCTGCTGGT CAACGGCTCG AACGGCATCG CCGTCGGCAT GGCTACCAAC ATTCCGCCCC ACAACCTGGG CGAAGCCATC GACGCTACGT GCTTGATGCT CGACAACCCC GACGTGACCA CCGAAGAGCT CATGGAGGTC ATGCCTGGCC CCGACTTCCC CACGGGCGGC GTGATCCGCG GTCGCGAGGG CATTATCAGC GCGTACGAAA CCGGCCGCGG CAGCTTGACC ATCCAGTCTT CCTACAAGAT TAAAGAAGGC AAGAACGGCA AGACCAGCAT CATCATTACC GAGATTCCGT ATCAGGTGAA CCGTTCCAAC CTCATGCAGA AGATCGGCGA GCTGGTCCGC GACAAGAAGC TGCCCGAGAT TTCAAACGTG CACGACGGCG CCGACCGCAA CAGCCCGGTG GACATCATCA TCGAGCTGAA GCAGAACGCC ATTCCTCAGG TCGTGCTGAA CAAGCTGTTC AAGCACACGC AGCTGCAGGT GGGCTGGGGC GTCATCATGA TCGCCCTGGT GGACGGCGTG CCCCGCACCC TTTCCCTTCG CGAGATCCTG CACTACTACA TCTTGCATCA GGAAGACGTT ATCCGCAGGC GCACCCAGTT CGACTTGGAA AAAGCCGAGG CCCGCGCCCA TATCGTCGAA GGCTTGCTGA TCGCGCTCGA CCACATCGAC GAGGTCATTG CCATCATCCG CGGCAGCCGC ACCGATAAAG AAGCATCCGA CAAACTGTCC GAGCGCTTCG GGCTGTCGGA AGCCCAGTGC ACCGCCATCC TGCAGATGCA GCTGCGCCGC CTGACTGGCT TGGAGCGCGA GAAGCTCCAG GAGGAATTGG CCGAGCTGAA AGAGAAGATC GCCTACTACA AGCGAATTCT GGCCGACGAG CATCTCATGC GTCAGGTCAT TAAGGAAGAG CTGCAGGAGA TCAAGGGCCG TTTCAACACG CCGCGCCGCA CCCGCATCGC CGGTCCCGCG AAGGACATCG ACGTCGAAGA TCTGATCGCC GACGAGGAAA TGGTCGTTAC CATGACCAAC GCCGGCTACA TCAAGCGTCT GCCCGTGACC ACCTACCGCC AGCAAAAACG CGGCGGCAAG GGCATGCAGG GCGTGAACCT GAAAGAGAAC GACTTCGTCG AGCATCTCTT TATTGCGTCC ACCCATAACT ACATGCTGTT CTTCAGTTCG GCAGGCAAGG TGTACCGCAA GAAGGTGTTC GAAATCCCCG AGGCCGGCCG CCATGCACGC GGTACCGCCG TGGTGAATCT GCTCAAGCTG GACAAAGGGG AATCCATCGT GGCCGCCATC GCCACCAAGG AGTTCCCCGA GGACGAGTTC CTGATGTTCG GCACCAAGGA GGGTATGGTC AAAAAGACCG CCATGTCGCT GTATGACCGC ACCCGTCAGG ACGGCCTGAT TGCCATCAAT CTGCGCGAAG GCGACGAGTT GATTGCCGTC AAGCGCGTAA AGCCTGGTGA GAAGGTCGCC ATGGTATCCA GCGCCGGCAA GGCCATCTCT TGGGATGAAA GCGAAGTCCG CGCCATGGGC CGTGACACTA TGGGTGTCCG CGGCATGACC GTGCCCGACG GCGTGCATGT GCTCGGCCTG GAAATCGCCA GCCCCGGCAA GGAAATCTTC GTGATTACCG AACGCGGCTA CGGCAAACGT ACCCCCGTTG AGGAGTATCC GCTGCACCAC CGCGGCGGCC AGGGCGTGTT CACCATCACG ATGACCGCCA AGAAGGGCCA GCTTGCAGCC ATGAAGGTCG TGACTTCCGA AGATGCGCTC ATGATCATTT CCGAAGAGGG CGTCGTCATG CGGACGAGCG TTTCCGACAT CAGCCAGCTG GGCCGCGCGA CCCAGGGCGT GAAGGTGATG AATGTCGACG GCAAGGACCG TGTGTCCGCC GTGGCCATCG CGCCGGACGG CAAACGCAAG AAGCGTCCCA AGGACAGCGG AGACATGGAA GTCTCCGAAG CCGATCTGGA AGATTAA
|
Protein sequence | MSDKEILEAA DSGNTGVQTA ELGREMRTSF LEYSMSVIVS RALPDVRDGL KPVHRRILYA MYDSGITPNK PHSKSARTVG DVIGKYHPHG DSAVYDAMVR LAQDFNMRVP LVDGHGNFGS IDGDSAAAMR YTEARLAKPA MELLADLGKE TVDWVPNYDE SLQEPSVLPA RFPNLLVNGS NGIAVGMATN IPPHNLGEAI DATCLMLDNP DVTTEELMEV MPGPDFPTGG VIRGREGIIS AYETGRGSLT IQSSYKIKEG KNGKTSIIIT EIPYQVNRSN LMQKIGELVR DKKLPEISNV HDGADRNSPV DIIIELKQNA IPQVVLNKLF KHTQLQVGWG VIMIALVDGV PRTLSLREIL HYYILHQEDV IRRRTQFDLE KAEARAHIVE GLLIALDHID EVIAIIRGSR TDKEASDKLS ERFGLSEAQC TAILQMQLRR LTGLEREKLQ EELAELKEKI AYYKRILADE HLMRQVIKEE LQEIKGRFNT PRRTRIAGPA KDIDVEDLIA DEEMVVTMTN AGYIKRLPVT TYRQQKRGGK GMQGVNLKEN DFVEHLFIAS THNYMLFFSS AGKVYRKKVF EIPEAGRHAR GTAVVNLLKL DKGESIVAAI ATKEFPEDEF LMFGTKEGMV KKTAMSLYDR TRQDGLIAIN LREGDELIAV KRVKPGEKVA MVSSAGKAIS WDESEVRAMG RDTMGVRGMT VPDGVHVLGL EIASPGKEIF VITERGYGKR TPVEEYPLHH RGGQGVFTIT MTAKKGQLAA MKVVTSEDAL MIISEEGVVM RTSVSDISQL GRATQGVKVM NVDGKDRVSA VAIAPDGKRK KRPKDSGDME VSEADLED
|
| |