Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_2160 |
Symbol | |
ID | 8368621 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 2576992 |
End bp | 2579064 |
Gene Length | 2073 bp |
Protein Length | 690 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 644984614 |
Product | Alpha-L-fucosidase |
Protein accession | YP_003142265 |
Protein GI | 256820986 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3669] Alpha-L-fucosidase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAAAT TAATCTTATT AGTCACCGCT TTATTTATGG TGGCTTGCAA AAGTATTGAA GCCCCCAAGT CAGTGGGAGC TATTCCTTCC GCACGTCAGT TGCCGTGGCA CGAGATGGAA TATTATGCTT TTATCCACTT TAATATGAAC ACCTTTACCG ATATGGAATG GGGCACAGGT GGCGAAGACC CTGTTTTATT CAACCCTACC GAATTAGATG TAAATCAGTG GGTGAAAGTG ATTAAAGACG CTGGTATGAA AGGTGTTATT ATCACGGCTA AGCACCACGA TGGTTTCTGC TTATGGCCAT CAAAGTACAC CGAGCATTCT GTAAAAAACT CACCTTGGAA AAACGGCAAA GGCGATGTTA TAAAAGAGCT TTCAGAAGCC TGCCACAAAG CAGGACTTAA ATTTGGAGTA TATTTATCAC CTTGGGATAG AAACCACGCT GAGTATGGTA GAGAAGCCTA CGTTACCTAT TTCCATAACC AACTACGAGA ATTACTTACC AATTACGGTG AAATATTTGA AGTATGGTTT GACGGTGCCA ACGGTGGTTC AGGTTATTAC GGTGGAGCTA ACGAAACTCG TACTATTGAT GCTCATACTT ATTATCAGTG GGATAAAACA TTTGCCATAG TACGCGAATT GCAGCCTAAT GCTACTATCT TTGGTGATGA AGGTCCGGAT ATTCGCTGGA TAGGTAATGA AAAAGGCTTT GGTACTCGTA CTAACTGGAA TCCTTTTACC TCTAACCCTT CTCTACAAGG AAAAGACCAC TTACATCATT TGGGTGAAGG TGATGAAAAT GGCGTAAATT GGATTCCTGC CGAAGCTGAT GTATCTATTC GCCCAGGTTG GTATTACCAC GCACGAGAAG ACCACCAAGT GCGTCCATTA GAAAAAATGG TAGACATATA CTACGCTTCA GTAGGTCGCG GTTACAACTT ATTACTGAAT CTTCCCGTGG ATAGACGTGG CTTAGTACAC GAAAATGACA TCAAGAGACT TATGGAACTC AAAAAAGTTA TAGAAGCAGA TTTTGCACGT AACCTCGTAA CTGATGCCTC TGTAACGGCT TCTAATATTC GTAAAAATAA CAAGCAATTT AAAGCTGAAA AAACTACCGA TAGTGATAAA AATACCTATT GGACAACCGA CGAAGGAGTA ACAGAAGCTT CTATAGAACT AAACTTTACC AAGCCTACTA CCTTCAACCG TTTTATGGCA CAAGAGTATA TCCCATTGGG GCAACGTGTA AAGAAGTTTA AATTAGAATA CCAAAAAGAT GGCAAATGGG AAACTATAGA TGAACAAACA ACTATTGGCT ACAAGCGATT ACTACGCTTC CCATCAGTAA CAGCTACTAA GGTACGTTTC ACAGTTTTAG AAGCTAAAGG TTCGCCATTG ATTAGCAATA TAGGGTTATA CAATGCACCT GTGTTATTGG TAACTCCTCA GCTTTCTCGT GATAAGAATG GTCTAGTAAC CCTCACTCCC GCTGATACTG AAACTGAAAT TTATTATACT TTAGACGGCA GTCAGCCTAC TGAACAGTCG TTGCGTTATA CAGCTCCTTT CCCCGTTACT CAGCCTACTT CTTTAAAATT TGTAGCCTAT GACCGCAAGC AGCAATTGTA CAGTGAAGTA GCTTCTTACG CATTGGATAT CCCCAAAGCA AAGTGGAAAG TGTTATCTTC TGCTTCCTCT GATATCCAGA AAGTAATTGA TGAGAAACCT AATACGTGGT TTGCTCAAGA AAAGGGCAAT ACACCGACTG CCATTACTAT TGATTTAGGA GAGCTGTTAA ACCTAAAAGG ATTTACCTAT TTGCCTTCAC AAGACCGCTG GGCTGAAGGC ACTATCAGTC ATTACATTTT TGAAGTGAGC GCTGATAATG TTCATTGGAA GAAGCTAAGT GAGGGAGAAT TTGGCAATAT CAAGAACAAT CCTATTGAAC AACGCATTAC CTTCCCTGCC GAGAAAGCCC GTTATATCAA GCTTACCGCT ACCAAAACTG TAGATGATAC CAATAGAGTA TCGTATGCCG AAATAGGAAT CATTACACAA TAA
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Protein sequence | MKKLILLVTA LFMVACKSIE APKSVGAIPS ARQLPWHEME YYAFIHFNMN TFTDMEWGTG GEDPVLFNPT ELDVNQWVKV IKDAGMKGVI ITAKHHDGFC LWPSKYTEHS VKNSPWKNGK GDVIKELSEA CHKAGLKFGV YLSPWDRNHA EYGREAYVTY FHNQLRELLT NYGEIFEVWF DGANGGSGYY GGANETRTID AHTYYQWDKT FAIVRELQPN ATIFGDEGPD IRWIGNEKGF GTRTNWNPFT SNPSLQGKDH LHHLGEGDEN GVNWIPAEAD VSIRPGWYYH AREDHQVRPL EKMVDIYYAS VGRGYNLLLN LPVDRRGLVH ENDIKRLMEL KKVIEADFAR NLVTDASVTA SNIRKNNKQF KAEKTTDSDK NTYWTTDEGV TEASIELNFT KPTTFNRFMA QEYIPLGQRV KKFKLEYQKD GKWETIDEQT TIGYKRLLRF PSVTATKVRF TVLEAKGSPL ISNIGLYNAP VLLVTPQLSR DKNGLVTLTP ADTETEIYYT LDGSQPTEQS LRYTAPFPVT QPTSLKFVAY DRKQQLYSEV ASYALDIPKA KWKVLSSASS DIQKVIDEKP NTWFAQEKGN TPTAITIDLG ELLNLKGFTY LPSQDRWAEG TISHYIFEVS ADNVHWKKLS EGEFGNIKNN PIEQRITFPA EKARYIKLTA TKTVDDTNRV SYAEIGIITQ
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