| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2157 |
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| Symbol | |
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| ID | 8368618 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 2573466 |
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| End bp | 2574881 |
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| Gene Length | 1416 bp |
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| Protein Length | 471 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644984611 |
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| Product | RNA methyltransferase, TrmA family |
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| Protein accession | YP_003142262 |
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| Protein GI | 256820983 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.615925 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCAAAA ATAAGCATAT AACCATTGAA AATGTAACCG TGATTGATGC AGGAGCCAAA
GGCAAAAGCA TTGCTAAAGC CCCTGACGGA CGTGTGATAT TTATAAGTAA CGCTATTCCT
GGTGATGTAG TAGATGTGCA GACCACCAAG AAGAAATCGG CTTATTATGA AGGTTTTGTA
ACTAAATATC ACCAACTATC AGAACAACGA GTAACGCCCG TATGTTCTCA CTTTGGCTAT
TGTGGCGGTT GCAAATGGCA AGATATGAAC TACCAAAGTC AGCTATTTTA CAAGCAGAAA
GAAGTAGAAA ACAACTTAGT ACGGTTAGGT AGGATAGAAA TTCCTGCTGT GATGCCTATC
ATAGGCTCTG ACGAGACTTA TTACTACCGC AACAAAATGG AGTTTTCTTT TTCGGATATG
CGCTGGCTTA CTCCCGATGA AATTAAGAAA GCCGACGAAA TAGACAATCG GAATGCCTTA
GGTTTTCACA TAGCAGGAGC TTGGGACAAG ATTTTGGACA TAGACAAATG TTACTTGCAA
GCCGACCCTT CTAACGCGAT ACGCTTGGAG GTAAAGCGTT TTGCCTTGGC GAACGAAATG
CCTTTTTACA GTCCGAGACA ACAAACAGGC TTATTGCGTA CTATGATGAT ACGCATTAGC
TCCATTGGGC AAATAATGGT AGTGATACAG TTCTTCCGCA ACGACCCTAA AATTACACTG
CTCCTTGACC ATATTGCAGA GACATTCCCG ATGATTACCT CTTTGCAATA CTGTATCAAT
AGCAAAGGCA ACGATGCTAT TTATGACCAA GAACTTATTT GCTATAAAGG TACTGACTGT
ATTTATGAGG AAATGGAAGG GTTGCGATTT AAAATCAATG CCAAGTCGTT TTACCAAACT
AACTCGGCAC AAGCGTACAA GCTGTACCAA GTAGCTCGTA ACTTTGCCGA TTTAAAGGGC
GATGAATTAG TGTACGACCT TTATACAGGG ACGGGCACTA TTGCGCAATT TGTAGCCAAA
AAAGCGAAAA AAGTGATAGG GGTAGAAGCT GTACCAGAGG CTATAGCAGA TGCCAAAGAC
AATGCTTTTG CCAATGGTAT TGAGAATGTT ACTTTTTACG TGGGAGATAT GAAAAACATT
TTCAACGACA CTTTTATAGA AGAAAACGGC ACCCCTGATG TGATTATCAC CGACCCTCCT
CGCGACGGTA TGCACAAAGA TGTAGTAGCT AAAATTCTTC AAATAGCCCC CAAAAAGATA
GTATATGTAA GTTGCAATAG TGCAACGCAA GCGCGAGACC TTTCCTTGCT TGATGTAACT
TATAAAGTAA CCAAAGTTCA GCCCGTGGAT ATGTTTCCAC AAACCTACCA CGTAGAGAAT
GTTGTATTAT TAGAGAAGAG AAATGAAAAA AGCTGA
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| Protein sequence | MSKNKHITIE NVTVIDAGAK GKSIAKAPDG RVIFISNAIP GDVVDVQTTK KKSAYYEGFV
TKYHQLSEQR VTPVCSHFGY CGGCKWQDMN YQSQLFYKQK EVENNLVRLG RIEIPAVMPI
IGSDETYYYR NKMEFSFSDM RWLTPDEIKK ADEIDNRNAL GFHIAGAWDK ILDIDKCYLQ
ADPSNAIRLE VKRFALANEM PFYSPRQQTG LLRTMMIRIS SIGQIMVVIQ FFRNDPKITL
LLDHIAETFP MITSLQYCIN SKGNDAIYDQ ELICYKGTDC IYEEMEGLRF KINAKSFYQT
NSAQAYKLYQ VARNFADLKG DELVYDLYTG TGTIAQFVAK KAKKVIGVEA VPEAIADAKD
NAFANGIENV TFYVGDMKNI FNDTFIEENG TPDVIITDPP RDGMHKDVVA KILQIAPKKI
VYVSCNSATQ ARDLSLLDVT YKVTKVQPVD MFPQTYHVEN VVLLEKRNEK S
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