| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2146 |
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| Symbol | |
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| ID | 8368607 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 2563358 |
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| End bp | 2564134 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 644984600 |
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| Product | Rhomboid family protein |
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| Protein accession | YP_003142251 |
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| Protein GI | 256820972 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.000095331 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACAGAA TATCTAAAAC AGTACTACAT CTGATTATTA TCAATACGAT AGTATTAATA
CTTACCGCAT TGAATGAAAA AGGACTATTT TTACCTCAAA TAAATATAGT CGGTACTTTT
GCCTTACACC ATTTTGAAAC TCCTTCTTTT CACTGGTGGC AATATATCAG CTATATGTTT
ATGCACGCTG ATTTCACACA CCTGCTCTTT AATATGTACG CCTTATGGGC TTTCGGGACA
CCTTTAGAAA ACATATGGGG GCGCAATAAG TTTCTATTCT TCTATTTCTC TTGTGGCGTA
GGAGCAGCCT TACTTCATAC GGGAGTAAAT TACTACTATG TACATCAAGC TGTCAATGCT
TTAGCGGAAG CTGGTGTGCC TGCTAATGAA GTTTTAGAAA TTATTGCAGA AGGTAAATAC
AATCCTAATT GGGGCAATAT CATCAATCAC AGCACCTTCC AAAGTATGTA TGATGTACTT
AGATCTACTA CCGTAGGTGC TTCAGGTGCT ATTTATGGTA TATTAGTAGC TTTTGGAATG
TTCTTCCCCG ATGCCAAACT GATGTTGTTC TTTATCCCCT ACCCTATAGC GGCTCGTTAT
TTTATCCCTT TACTCGTAGC CTTAGACTTA ATAATGGGAT TTGTAGGAGG AATTACTATT
TTCGGTGGTA ATATCGCTCA TTTTGCACAC GTAGGAGGGG CTCTCATAGG CTTCCTAATT
ATGTTGTACT GGAAAAAGCA CAACTTTGAT AAGAATAGAT GGGACAGAAG ATTGTAA
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| Protein sequence | MDRISKTVLH LIIINTIVLI LTALNEKGLF LPQINIVGTF ALHHFETPSF HWWQYISYMF
MHADFTHLLF NMYALWAFGT PLENIWGRNK FLFFYFSCGV GAALLHTGVN YYYVHQAVNA
LAEAGVPANE VLEIIAEGKY NPNWGNIINH STFQSMYDVL RSTTVGASGA IYGILVAFGM
FFPDAKLMLF FIPYPIAARY FIPLLVALDL IMGFVGGITI FGGNIAHFAH VGGALIGFLI
MLYWKKHNFD KNRWDRRL
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