| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2112 |
|---|
| Symbol | |
|---|
| ID | 8368573 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2531804 |
|---|
| End bp | 2532925 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644984566 |
|---|
| Product | cell wall hydrolase/autolysin |
|---|
| Protein accession | YP_003142217 |
|---|
| Protein GI | 256820938 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0860] N-acetylmuramoyl-L-alanine amidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0823125 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTA TATACATTCT TCTTTTTTCA CTATGCAGTA GTACTTTTAG TCTGTTTTAT
GGACAGAAGA ACCCTGTGTT TAAAGTAGTT TTAGATGCGG GTCACGGAGG TAAAGACCCC
GGTAAAGTAG TACAGAAAAA CATCTTTGAG AAAGATGTGG TGCTGAAAAT AGTATTATTA
GTAGGCAAAA AGTTAGAGGC TTACCCTGAT ATAAAGGTGA TTTACACTCG CAAAACCGAT
GTGCTAATTG ACCTTTATGA GCGTGGAGCT ATTGCCAACA GGAACAAAGC CGATGTATTC
GTTTCAGTAC ACTGCAACGC TCACGAAACA CAAGTAGACG GTGCGGAAAC ATATGTATTA
GGGCTACACG CCAACCAGCA GAACTTTGAG GTTGCCAAAG CCGAAAACTC GGTAATCTAC
TTGGAAGATG ATTACAAAAA GAAATACGCT AAGTACAATA TCAACTCACC TGAATCGGTA
ATAGGGCTAT CTATTATGCA AGAAGAGTTC TTGGAGCAGA GCATTCAGCT AGCTAAGTTA
GTGCAAAACC AACTCACAGG AGTGATGAAA CGCACTAACA GAGGCGTGCG CCAAGCGGGA
TTCATCGTCT TGCACCAAAC CTATATGCCC AGTATTCTTA TAGAAACAGC ATTCCTTACT
AACAACGAGG AACGCAAATT CCTCACCTCG GCTAAGGGGC AAGAAGAGTT TGCAGAGAAC
ATTGCTGAGG CGATACTCGC TTACAAGAAA TGGATAGAAG ACAAAAGTTC TTATACTACC
CCTGACGACA GTATTTCACA AGTAAGAGAA AAAAGTAATA CCCCAAGACA AAGTACAAGT
AATAGCACTA TCAACAACAG CGATTTGAGC TATAAAGTAC AGATATCATC AAGCCCTAAA
AATTTAGAAA CAAAGGCTTT TAACTTCAAA GGACTCTCGC CTATATCGGT TGAAAAAGAT
GGGCGTGTAT ATGTGTATTA CTATGGTGAT ACTTCGAAGC ACAGAGAAGC CCTTGAGCTA
CTGAACAAAG CAAAAAAAAA AGGGTATAAA GATGCTTATA TCGTAGCTTT TTACCAAAAG
AAACGCATTA CAGTAGAAAG AGCTAAACAA ATAGAAAAGT AA
|
|---|
| Protein sequence | MKFIYILLFS LCSSTFSLFY GQKNPVFKVV LDAGHGGKDP GKVVQKNIFE KDVVLKIVLL
VGKKLEAYPD IKVIYTRKTD VLIDLYERGA IANRNKADVF VSVHCNAHET QVDGAETYVL
GLHANQQNFE VAKAENSVIY LEDDYKKKYA KYNINSPESV IGLSIMQEEF LEQSIQLAKL
VQNQLTGVMK RTNRGVRQAG FIVLHQTYMP SILIETAFLT NNEERKFLTS AKGQEEFAEN
IAEAILAYKK WIEDKSSYTT PDDSISQVRE KSNTPRQSTS NSTINNSDLS YKVQISSSPK
NLETKAFNFK GLSPISVEKD GRVYVYYYGD TSKHREALEL LNKAKKKGYK DAYIVAFYQK
KRITVERAKQ IEK
|
|---|
| |