Gene Coch_2100 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_2100 
Symbol 
ID8368561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp2515997 
End bp2516905 
Gene Length909 bp 
Protein Length302 aa 
Translation table11 
GC content36% 
IMG OID644984554 
ProductNLP/P60 protein 
Protein accessionYP_003142205 
Protein GI256820926 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0791] Cell wall-associated hydrolases (invasion-associated proteins) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.660776 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTACGTAT TAAGAATTTT AGGTTTATTT ACACTACTAC TCAGCTTATC TTCCTTTTCA 
GAGGCAGTAA AGAATACCGA AAAGAGTGTA GTTGTAAATA CAGCTACCAC AAAGGCTGTG
GAAAATAAGA GTAAGCCTAA AAAGAAAACA TTTTCTCCTC CTAAGAAAGG GAGAAAAGCT
ACTACTAGAG TGGCTACAAC AACTAAAAAA CGTCATAAGT TACCTCCTAA ACGCAGTGTA
GCTCATCATT CTGCCAAAAA GTCTGTAAAA AAAGCTCCTG TTAAGAGAGC TTTAGCTATA
ACTGATAAAA AGAAAAAGCC TGTAAAAGCA GATATAGCTG TTGCTAAGAG TAAGAGATAT
GCTCCTAAAA AACACACCGG TAATAAAGCC CTAAAACAAT ACGCTGAGAA TACTCTCGCA
GACACTGAAT TGGAAGACGA CTTAGAAGAC GAAGAACTAT TTGAGGAACC TGAAAGCTAT
GAAACTACCG ATATAGCGCT TACTGCACTC TCTAAAAGTA AAGCAGATAC CAAACAACAG
AAAGTATTAT TAGATACAGC TTTCTCATAT TTAGGAACTC CTTACAGACA CGGAGGTGTT
ACCCGTAATG GTATGGATTG TTCTGGTTTT GTAAGTACTA CTTTCAAATC TATTTCAGTA
CCATTATCTC GCTCCTCACA AGAAATGGCT ACACAAGGAA CTAAAATTGA CTTGGAAGAT
GTAAAAGTAG GCGATTTACT TTTCTTCAGA ACAACTAGGA AAAGCAGAAT ATCACACGTA
GGTATGGTAG TAGATATAGA TGGAGATATT AAATTCATAC ACTCTTCCTC TAAAAGAGGA
GTTGTGATTT CTTCATTAAG TGATGAATAT TACAAGAAAA CATTTCGTAT GGCAAAACGT
GTAATGTGA
 
Protein sequence
MYVLRILGLF TLLLSLSSFS EAVKNTEKSV VVNTATTKAV ENKSKPKKKT FSPPKKGRKA 
TTRVATTTKK RHKLPPKRSV AHHSAKKSVK KAPVKRALAI TDKKKKPVKA DIAVAKSKRY
APKKHTGNKA LKQYAENTLA DTELEDDLED EELFEEPESY ETTDIALTAL SKSKADTKQQ
KVLLDTAFSY LGTPYRHGGV TRNGMDCSGF VSTTFKSISV PLSRSSQEMA TQGTKIDLED
VKVGDLLFFR TTRKSRISHV GMVVDIDGDI KFIHSSSKRG VVISSLSDEY YKKTFRMAKR
VM