| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2085 |
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| Symbol | |
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| ID | 8368546 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | + |
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| Start bp | 2499951 |
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| End bp | 2500685 |
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| Gene Length | 735 bp |
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| Protein Length | 244 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 644984539 |
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| Product | Shikimate dehydrogenase substrate binding domain protein |
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| Protein accession | YP_003142190 |
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| Protein GI | 256820911 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0169] Shikimate 5-dehydrogenase |
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| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.434063 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGACAATTT TTGCTCTTGT GGGTCGTAAT ATTGGCTATT CTTTTTCTCG AAAATATTTC
ACTGAGAAAT TTAAACGAGA AGGTATTAAT GATTGTGAAT ATATCAATTT TGATATACAA
AATCTCAATG AATTACCCGC TCTCTTAAAA AACACTCCTA ACTTACGAGG AATGAATGTT
ACCATTCCGT ATAAGCGAGA AATAATGAAG CTACTTACTA CCGTTGATGC TACTGCACAA
GCCATTGGAG CTGTGAATAC TATAAAAGTT ACCCCTGATG GACTTGTCGG TTATAATACC
GACTACTATG GCTTTAGCAA ATCATTATCT CCTTTATTGC AACCACATCA TACTCACGCT
CTTATCTTAG GTACGGGAGG TGCATCGAGT GCTGTTGCTT ATGCGCTCAA GCAACTAAAT
ATTGATTATC GTTTTGTATC CCGCACACCA CAGATGAATC AGTTTACTTA CGCAGAACTT
ACCAAAGAGA TTATAGAAAA TTATCACCTT ATTATTAACA GTACTCCCTT AGGTACATTT
CCTAATATTA ACGACTGTCC TCCTATTCCT TATGAATATC TCACTCCTGA GCACTTGCTT
TATGACCTTA TTTATAATCC TTCACAAACT ACATTTCTAC ACAGAGGGGA AAAGCAGGGA
GCTACTACTT GTAATGGGCA ACTAATGTTA GAACTTCAAG CTGAAAAAGC GTGGGAAATA
TGGAATAAAG AATAA
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| Protein sequence | MTIFALVGRN IGYSFSRKYF TEKFKREGIN DCEYINFDIQ NLNELPALLK NTPNLRGMNV
TIPYKREIMK LLTTVDATAQ AIGAVNTIKV TPDGLVGYNT DYYGFSKSLS PLLQPHHTHA
LILGTGGASS AVAYALKQLN IDYRFVSRTP QMNQFTYAEL TKEIIENYHL IINSTPLGTF
PNINDCPPIP YEYLTPEHLL YDLIYNPSQT TFLHRGEKQG ATTCNGQLML ELQAEKAWEI
WNKE
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