| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_2028 |
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| Symbol | |
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| ID | 8368489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 2426028 |
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| End bp | 2428151 |
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| Gene Length | 2124 bp |
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| Protein Length | 707 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644984482 |
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| Product | RNA binding S1 domain protein |
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| Protein accession | YP_003142133 |
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| Protein GI | 256820854 |
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| COG category | [K] Transcription |
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| COG ID | [COG2183] Transcriptional accessory protein |
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| TIGRFAM ID | [TIGR00426] competence protein ComEA helix-hairpin-helix repeat region |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAACA TTCAATATAT AAAAGCCCAA ACACAACTAC CTGAAAAAGC TATTGAAAAC
ACACTTTCAC TATTAACCGA AGGCTGCACT ATCCCCTTCA TTGCACGCTA TCGAAAAGAT
AGCACTCAGA ATTTAGATGA AGCAGCCATT GAGCATATTG CCAAATCCCA AGCTGATTAC
GACAATATCT GTAAGCGCAA AGAAACAATT CTCTCTTCTA TTGAAGAACA AGGAAAGCTT
ACAGACGATT TGCGTAAACG TATTGAGAAC TCTTTTGAGC TCAATGAATT AGAAGACCTA
TACTTACCTT ATAAAAAACG GCGTAAAACA AAAGCCGATG TAGCCAAAGA AAACGGCTTA
GAACCTCTTG CAAAACAGAT AATGAGTCAG CGTGTAACCG ATTTGGAACT ATTAGCAGGA
CGTTACCTTT CCGACAAAGT ACCTACTGAA GAAGATGCTT TACAAGGGGC TTCGGATATT
ATAGCTGAAT GGATTAATGA GAATACGTTT ATACGTCGCA CTCTTCGCCG AATATTCCAG
CGCAAAGCAA TCATCAGTAG CGAAGTAGCC AAAGGTAAAA ACGAAGAGGA AGAAGCTCAG
AAATACGCTC AGTATTTCGA TTGGGAAGAA GCCCTTAACA AAGCGCCCTC TCACCGTGTA
TTAGCAATGT TGCGTGCTGA AAAAGAAGGA TTTGTAAAAC TAAAAGTACA AGTAGATAGT
GAAGAAACCT TACCCTTTAT GGAAGAAAAC ATCATAAAGA GTAGGGGAGA AGTAGCCGAT
TTCTTGAAGA AAACGGTAAA AGACAGCTAC AAACGCTTAT TAGAGCCTTC TATTTCCAAC
GAAACACTAC AAGAGGCAAA AGATAAAGCC GATGCGAAAG CTATCAGTGT GTTTGCCGAG
AACCTCTCAC AGTTGTTATT AGCGTCTCCT TTGGGTGAAA AGCGCATTTT GGCTATTGAT
CCAGGATATC GTACAGGTTG TAAGGTAGTG TGTTTAGATG AAAAAGGCGA CCTTTTGCAT
CACGATGTTA TCTATCCTCA CGCTCCCCAG AATGATATGA CTATGGCTAC CAAAAAGCTC
AGCACAATGG TCTCTCAATA CAATATCCAA GCCATTAGTA TAGGCAATGG TACTGCTTCT
CGTGAAACAG AGTCGTTTGT AAGAAGTATT GCTTTCCCTA AAAAGGTAGA AGTATTTGTC
GTGAGTGAAG CAGGAGCATC AGTCTATTCA GCTTCTAAAA TAGCTCGCGA CGAGTTCCCC
GATTACGATG TAACTGTACG TGGTGCAGTA TCCATAGGTA GGCGTCTTGC TGACCCATTA
GCTGAATTAG TGAAGATAGA CCCTAAGAGC ATAGGAGTAG GTCAATACCA ACACGATGTA
AACCAGTCGT TATTGAAAGA GGAGCTCGAT GCAACCGTAG TGCGTTGCGT GAACAAAGTA
GGGGTAAACC TCAACACAGC AAGCAAATCA CTACTCAGTT ATGTATCAGG GATAGGAGAG
AAGATGGCTG AAAACATAGT AGCTTACCGC TCGGCTAATG GTGCTTTTAG TAAGCGAGAA
GACTTAAAAA AGGTACCTCG TTTGGGGGAT AAAGTATACC AGCAGGCAGT AGCTTTCTTG
CGTGTACATA ATAGTGAGAA CCCGCTCGAC AATTCAGCAG TACACCCCGA AGCCTATCCT
ATCATCAAAC AAATGGCAAA GCACACGGGT ATCTCAGTTG CACAACTTAT AGGTAATAAG
CAAGCTATTG CCACTATTGA TATTCAAAAG TACAAAACAG ATAAGGTGGG TGAACTTTAT
TTGAAGGACG TATTAAAGGA ATTAGAAAAA CCAGGGCTCG ACCCTCGTAC TACTGCTAAA
GCCTTTGCCT TCGACCCTAA TGTAAAAACC TTCGATGATG TGCGTGTAGG AATGATATTA
CCTGGTATAG TAAACAATAT TACTGCCTTT GGTTGCTTTG TGGATATAGG TGTTAAAGAA
AGTGGATTGG TACACATCTC TCAACTGAAA GAAGGTTATG TCTCTGATGT AAATGAAGTA
GTTAAACTCC ACCAACAAGT GCAAGTAAAA GTTATAGAGA AAGACGAAGT GCGTAAACGC
ATTTCACTAA GTATGGTGTG GTAA
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| Protein sequence | MTNIQYIKAQ TQLPEKAIEN TLSLLTEGCT IPFIARYRKD STQNLDEAAI EHIAKSQADY
DNICKRKETI LSSIEEQGKL TDDLRKRIEN SFELNELEDL YLPYKKRRKT KADVAKENGL
EPLAKQIMSQ RVTDLELLAG RYLSDKVPTE EDALQGASDI IAEWINENTF IRRTLRRIFQ
RKAIISSEVA KGKNEEEEAQ KYAQYFDWEE ALNKAPSHRV LAMLRAEKEG FVKLKVQVDS
EETLPFMEEN IIKSRGEVAD FLKKTVKDSY KRLLEPSISN ETLQEAKDKA DAKAISVFAE
NLSQLLLASP LGEKRILAID PGYRTGCKVV CLDEKGDLLH HDVIYPHAPQ NDMTMATKKL
STMVSQYNIQ AISIGNGTAS RETESFVRSI AFPKKVEVFV VSEAGASVYS ASKIARDEFP
DYDVTVRGAV SIGRRLADPL AELVKIDPKS IGVGQYQHDV NQSLLKEELD ATVVRCVNKV
GVNLNTASKS LLSYVSGIGE KMAENIVAYR SANGAFSKRE DLKKVPRLGD KVYQQAVAFL
RVHNSENPLD NSAVHPEAYP IIKQMAKHTG ISVAQLIGNK QAIATIDIQK YKTDKVGELY
LKDVLKELEK PGLDPRTTAK AFAFDPNVKT FDDVRVGMIL PGIVNNITAF GCFVDIGVKE
SGLVHISQLK EGYVSDVNEV VKLHQQVQVK VIEKDEVRKR ISLSMVW
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