Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_2020 |
Symbol | |
ID | 8368481 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | + |
Start bp | 2413816 |
End bp | 2415054 |
Gene Length | 1239 bp |
Protein Length | 412 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 644984474 |
Product | sodium/glutamate symporter |
Protein accession | YP_003142125 |
Protein GI | 256820846 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0786] Na+/glutamate symporter |
TIGRFAM ID | [TIGR00210] sodium--glutamate symport carrier (gltS) |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.733127 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATATGA AAACCATTAT CATCGACCCT TATTACACCC TGATTGTCGC TACAATAGTG TTGCTCGTAG GGCGACTATT AGTGCATAAA ATCAAATTTT TAAGAAACTT CAATATACCC GAACCTGTAG CGGGCGGATT GTTAGCAGCA GTATTTATCT ATCTGCTGTA TACTGCCACA GGCATTTCCT TAGAGTTCAA TACCAGCTTG CAAGATGCTT TTATGCTATT TTTCTTTTCG TCCATAGGTT TGAGTGCCGA TTTCTCTCGA CTAAAAGCTG GTGGTAGAGG GCTGATTATT TTCCTGGGGG TGGTCGCCCT CTTTATTGTA GTACAGAACT CTGTGGGGGT AGGCTTAGCA AGTGCCTTGG GGCAAAACCC TGTTATGGGA CTCATCACGG GCTCTATAAC ACTTACTGGC GGACACGGAA CGGCAGGTGC TTGGGGTAAA ATATTAGAAA CCGACTACGG TATAAAGGGA GCTACTGACC TGGGAATGGC TTCGGCTACC TTCGGATTGG TACTCGGCGG ACTTATTGGT GGTCCTATAG CACGCAAGTT AGTGAACAAT ATAGGAAAAA AGCCTATTAC TGAAAAACAA AGTACTGACA CCGTAGCCGA TAACGTAGTA GAAGTTTTTG AAAATGCAAT TAAACAACGC CTCATCACTT CTAAATCAGC GATAGAAACT ATGGCACTAT TTGCCGCTTG CCTATCGTTT TCAGCTATAA TGGTATCACC CACAGTAACT GCCTTTTTCC CAGAAAGATT CACTATTCCT CAGTTTGTAT GGGCATTGTT CTTTGGGGTA CTCTTGCGCA ATGTGCTTAC CAGAGGCTTT AGTGTAAATA TGTTCGACCG CGCTATCGAT GTGTTTGGCA ACGCTTCTCT GAGTTTGTTT TTAGGCATTG CCCTCTTAAA CCTCAAACTG TGGCAATTGC TTGATTTAGC CCTCCCGATG CTCATTATTT TGGCAGTGCA AACCTTTGTG ATGTGCTCTT ATGCCTATTT TGTTACCTTT CGCCTGATGG GTAGCAACTA CGATGCTGCT GTACTCTCAG CAGGACACTG TGGTTTTGGT ATGGGTGCCA CCCCTACGGC AGTCGCCAAT ATGCAGTCGG TAACCGAGCG TTTTGGACCT TCACACAAAG CCTTCTTGAT AGTGCCAATG GTAGGGGCTT TCTTTATCGA CTTCATCAAT GCTTTTATTT TAACTACATT TATTAGTTTG TTGCAATGA
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Protein sequence | MDMKTIIIDP YYTLIVATIV LLVGRLLVHK IKFLRNFNIP EPVAGGLLAA VFIYLLYTAT GISLEFNTSL QDAFMLFFFS SIGLSADFSR LKAGGRGLII FLGVVALFIV VQNSVGVGLA SALGQNPVMG LITGSITLTG GHGTAGAWGK ILETDYGIKG ATDLGMASAT FGLVLGGLIG GPIARKLVNN IGKKPITEKQ STDTVADNVV EVFENAIKQR LITSKSAIET MALFAACLSF SAIMVSPTVT AFFPERFTIP QFVWALFFGV LLRNVLTRGF SVNMFDRAID VFGNASLSLF LGIALLNLKL WQLLDLALPM LIILAVQTFV MCSYAYFVTF RLMGSNYDAA VLSAGHCGFG MGATPTAVAN MQSVTERFGP SHKAFLIVPM VGAFFIDFIN AFILTTFISL LQ
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