Gene Coch_2020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_2020 
Symbol 
ID8368481 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp2413816 
End bp2415054 
Gene Length1239 bp 
Protein Length412 aa 
Translation table11 
GC content44% 
IMG OID644984474 
Productsodium/glutamate symporter 
Protein accessionYP_003142125 
Protein GI256820846 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0786] Na+/glutamate symporter 
TIGRFAM ID[TIGR00210] sodium--glutamate symport carrier (gltS) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.733127 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATATGA AAACCATTAT CATCGACCCT TATTACACCC TGATTGTCGC TACAATAGTG 
TTGCTCGTAG GGCGACTATT AGTGCATAAA ATCAAATTTT TAAGAAACTT CAATATACCC
GAACCTGTAG CGGGCGGATT GTTAGCAGCA GTATTTATCT ATCTGCTGTA TACTGCCACA
GGCATTTCCT TAGAGTTCAA TACCAGCTTG CAAGATGCTT TTATGCTATT TTTCTTTTCG
TCCATAGGTT TGAGTGCCGA TTTCTCTCGA CTAAAAGCTG GTGGTAGAGG GCTGATTATT
TTCCTGGGGG TGGTCGCCCT CTTTATTGTA GTACAGAACT CTGTGGGGGT AGGCTTAGCA
AGTGCCTTGG GGCAAAACCC TGTTATGGGA CTCATCACGG GCTCTATAAC ACTTACTGGC
GGACACGGAA CGGCAGGTGC TTGGGGTAAA ATATTAGAAA CCGACTACGG TATAAAGGGA
GCTACTGACC TGGGAATGGC TTCGGCTACC TTCGGATTGG TACTCGGCGG ACTTATTGGT
GGTCCTATAG CACGCAAGTT AGTGAACAAT ATAGGAAAAA AGCCTATTAC TGAAAAACAA
AGTACTGACA CCGTAGCCGA TAACGTAGTA GAAGTTTTTG AAAATGCAAT TAAACAACGC
CTCATCACTT CTAAATCAGC GATAGAAACT ATGGCACTAT TTGCCGCTTG CCTATCGTTT
TCAGCTATAA TGGTATCACC CACAGTAACT GCCTTTTTCC CAGAAAGATT CACTATTCCT
CAGTTTGTAT GGGCATTGTT CTTTGGGGTA CTCTTGCGCA ATGTGCTTAC CAGAGGCTTT
AGTGTAAATA TGTTCGACCG CGCTATCGAT GTGTTTGGCA ACGCTTCTCT GAGTTTGTTT
TTAGGCATTG CCCTCTTAAA CCTCAAACTG TGGCAATTGC TTGATTTAGC CCTCCCGATG
CTCATTATTT TGGCAGTGCA AACCTTTGTG ATGTGCTCTT ATGCCTATTT TGTTACCTTT
CGCCTGATGG GTAGCAACTA CGATGCTGCT GTACTCTCAG CAGGACACTG TGGTTTTGGT
ATGGGTGCCA CCCCTACGGC AGTCGCCAAT ATGCAGTCGG TAACCGAGCG TTTTGGACCT
TCACACAAAG CCTTCTTGAT AGTGCCAATG GTAGGGGCTT TCTTTATCGA CTTCATCAAT
GCTTTTATTT TAACTACATT TATTAGTTTG TTGCAATGA
 
Protein sequence
MDMKTIIIDP YYTLIVATIV LLVGRLLVHK IKFLRNFNIP EPVAGGLLAA VFIYLLYTAT 
GISLEFNTSL QDAFMLFFFS SIGLSADFSR LKAGGRGLII FLGVVALFIV VQNSVGVGLA
SALGQNPVMG LITGSITLTG GHGTAGAWGK ILETDYGIKG ATDLGMASAT FGLVLGGLIG
GPIARKLVNN IGKKPITEKQ STDTVADNVV EVFENAIKQR LITSKSAIET MALFAACLSF
SAIMVSPTVT AFFPERFTIP QFVWALFFGV LLRNVLTRGF SVNMFDRAID VFGNASLSLF
LGIALLNLKL WQLLDLALPM LIILAVQTFV MCSYAYFVTF RLMGSNYDAA VLSAGHCGFG
MGATPTAVAN MQSVTERFGP SHKAFLIVPM VGAFFIDFIN AFILTTFISL LQ