Gene Coch_1956 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1956 
Symbol 
ID8368414 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp2351139 
End bp2351522 
Gene Length384 bp 
Protein Length127 aa 
Translation table11 
GC content37% 
IMG OID644984407 
Productlarge conductance mechanosensitive channel protein 
Protein accessionYP_003142061 
Protein GI256820782 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1970] Large-conductance mechanosensitive channel 
TIGRFAM ID[TIGR00220] large conductance mechanosensitive channel protein 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGGATTTT TAAAAGAATT TAAAGAATTT GCCGTAAAAG GTAACGTAGT AGATTTAGCC 
ATCGGGGTTA TCATCGGGGC TGCTTTTGGT GCTATCGTAT CATCATTAGT GTCTGATGTT
ATTACCCCTT TGTTATTAAC ACCTGCTTTG AAAGCTACGG GTGCTGAACA CTTAGAAGGT
TTGGTATGGA ATGGAGTAGC TTATGGTAAG TTTCTTGCCG CTGTAATTAA CTTCTTCTGT
ATTGCACTTG TATTGTTTAT GCTTCTAAAA GGTATCAACA AGCTAAACAA ACAGAAAAAA
GAAGAAGAGG CTCCTGCTAC ACCAGCTGGT CCTACTCAAG AAGAGTTACT TACTGAGATT
AGAGATTTAT TGAAAAATAA ATAA
 
Protein sequence
MGFLKEFKEF AVKGNVVDLA IGVIIGAAFG AIVSSLVSDV ITPLLLTPAL KATGAEHLEG 
LVWNGVAYGK FLAAVINFFC IALVLFMLLK GINKLNKQKK EEEAPATPAG PTQEELLTEI
RDLLKNK