| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1944 |
|---|
| Symbol | mnmA |
|---|
| ID | 8368402 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 2330681 |
|---|
| End bp | 2331874 |
|---|
| Gene Length | 1194 bp |
|---|
| Protein Length | 397 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644984396 |
|---|
| Product | tRNA-specific 2-thiouridylase MnmA |
|---|
| Protein accession | YP_003142050 |
|---|
| Protein GI | 256820771 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain |
|---|
| TIGRFAM ID | [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGAG TAGTAGTAGG ACTTAGCGGA GGGGTAGACA GTAGTGTAGC AGCCTATTTG
TTAAAAGAAC AAGGGTATGA AGTGATAGGA CTTTTTATGA AGAATTGGCA CGATGATTCG
GTTACTATTT CAGATGAATG TCCTTGGTTA GAAGATAGTA ACGATGCGCT TTTAGTAGCC
GAAAAGCTCG GTATTCCATT TCAAACGGTG GATATGAGTG AACCCTACAA AGCCCGTATT
GTCGATTATA TGTTCAATGA ATATGAACAC GGCAGAACAC CTAATCCCGA TGTGTTGTGT
AATCGCGAAA TCAAGTTTGA TGTCTTTATG AAGCTCGCCC TTAGTTTAGG CGCCGATTAC
GTAGCAACAG GACACTATTG TCGCAAAGAA GAAATAGAGA TAAAAGGTGG AAAAATCTAC
CGATTACTAT CGGGGAAAGA TGAAAATAAA GACCAATCGT ATTTCCTATG TCAGCTTTCA
CAAGACCAAC TTAGTAAAGC ACTTTTTCCT GTTGGAGAAT TGCAGAAATC GGAAGTGAGA
GCCATTGCTA AAGCCCAAGA TTTGATAACC GCTGATAAAA AAGATTCTCA GGGACTTTGC
TTTGTAGGAA AAGTACGTTT ACCCGAGTTC CTACAACAAA AGCTACAACC CAAACAAGGC
GATATTATTG AAATCCCCAA TGATTGGAAA GGATATACTG ACTTTGATAT GCCACGCACT
TTTGAAACTT ATGAAGACGA ATTGGAGTAT TTGTCACAAC GTTTTGTGTA TCAACCCGAA
AACGGTAAAA AAGTAGGTAT CCATCAAGGG GCTCATTATT TTACTAAAGG GCAACGCAAA
GGCTTAAATG TGGGAGGAAC CAAAGAACCT TTGTTCATTA TAGAAACTGA TATCGAAAAG
AATATCATCT ATACAGGACA AGGACACACA CATCGCGGAT TGTTCCGCAG TGCTTTGTTT
ATAGCAACCC CTGATGAACA TTGGATTCGA GAAGATTTGG CATTAAAAAT ATATGAATCG
AAAGAGTTTA TGGTACGTAT ACGCTATCGT CAGCCATTAC AGAAAGCGGT TTTATACAAA
GTCGAAAACG GTTTGTATAT TCATTTTTCA GAACCCCAAA GTGCTATTAC TGAGGGACAA
TTTGCTGCCT GGTATAGCGG AGATGAATTA GTGGGTAGCG GTGTTATTTC ATAG
|
|---|
| Protein sequence | MKRVVVGLSG GVDSSVAAYL LKEQGYEVIG LFMKNWHDDS VTISDECPWL EDSNDALLVA
EKLGIPFQTV DMSEPYKARI VDYMFNEYEH GRTPNPDVLC NREIKFDVFM KLALSLGADY
VATGHYCRKE EIEIKGGKIY RLLSGKDENK DQSYFLCQLS QDQLSKALFP VGELQKSEVR
AIAKAQDLIT ADKKDSQGLC FVGKVRLPEF LQQKLQPKQG DIIEIPNDWK GYTDFDMPRT
FETYEDELEY LSQRFVYQPE NGKKVGIHQG AHYFTKGQRK GLNVGGTKEP LFIIETDIEK
NIIYTGQGHT HRGLFRSALF IATPDEHWIR EDLALKIYES KEFMVRIRYR QPLQKAVLYK
VENGLYIHFS EPQSAITEGQ FAAWYSGDEL VGSGVIS
|
|---|
| |