| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1934 |
|---|
| Symbol | |
|---|
| ID | 8368392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 2318662 |
|---|
| End bp | 2319903 |
|---|
| Gene Length | 1242 bp |
|---|
| Protein Length | 413 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644984386 |
|---|
| Product | Tetratricopeptide TPR_2 repeat protein |
|---|
| Protein accession | YP_003142040 |
|---|
| Protein GI | 256820761 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGCTG CCTTACTGAT TTCGGCAGTG GCGTTCGGAC AAAAAAAAGA ACTCAAAGAG
ATTGAAAAAC AAATCCGTAA AGGAGATTTA ACGACTGCCA AAAGCGGATT AAGCTCCATT
AAAGGTTCTA TTGAGGGTAC AGAATTTGCA CCTCAGTTCT ATTTCTTGGA AGCACAAGTG
AATGTGGAGG CTGCCAAGAA AAATGAAAAT GTATTGGCTT CGTTGCAAGC GGCTTCTTCA
GCTTTTGCCA AAGTAAGACA ATTAGAAGGA GGTAAAGGTA AATACACAAA CCAGTTGCAA
ACTTTGGCTG ATGAGGCTAT TAATATTGCA GCTAAGCAAG CACAAGACAA TTACGAGCGT
AAAAACTACA AGAATGCTTC GGTTGCTTTT GAACAAGTAT ACCGCCTCAG TCCGCGTGAT
ACTGTATTTT TGTACAATGC GGCAGTAGTA TCGGTTGAAA ATAAAGATTA TGACAACGCT
GTGAAACTTT ATAAAGAGTT GAAAGACTTA GGTTATGACG GTGCTGAAAC ACTTTATTTG
GCTACTAATA AACAAACTAA AAAAGAGGAA ACTTTCCCTG ATAAAAATCA GCGTGATTTG
ATGGTAAAAG CAGGTACTCA CGAAAAAGCT AGAAATGAAA AAACGCCTTC AAAACGTGCT
GATATCGTGA AAAATATTGC CTTTATTTAC GTAGAGCAAA ACAAGACTGA TGAGGCGCTA
AAAGCTTTTG CTGAAGCAAG AAAAGCTTAT CCTAAAGATG CTAACATCAT TCTTGCTGAA
GCGAATGTTT ACTTGCAATT AGACAATAAA GAAAAATTTA AACAACTAAT GCAAGAAGCT
GCACAGCTTG ACCCTAATAA TGCTGACCTT CACTACAATA TTGGGGTTAT CAATATGCAA
CAAGGTAACA ATATAGAGGC TCGTAAAGCT TTTGAACAAG CCCTTAAAAT TAAACCTAAA
TATGCTGATG CTACTTTGAA CCTTTCGACT ACTTACATTA ATGAAGGTAA TGCTTTGGTT
GAGCAAATGA ATTCATTAGG CAATTCGGCT GCTGATACTA AGAAATTCAA TGAACTTAGA
GACCAAAAAG AAGCTTTGTT TAAAAAAGCT GCTGAAGTAT TAGAAAGCTA CGTGAAAGCT
AATGGCAACG ATAAAAATAT CTTGGAACAA CTAAAGAGCA TTTATGGAGC TTTGAGCGAC
AGTGCTAACT TCCAACGTGT TAAAAAACTA TTGGGTGAAT AA
|
|---|
| Protein sequence | MAAALLISAV AFGQKKELKE IEKQIRKGDL TTAKSGLSSI KGSIEGTEFA PQFYFLEAQV
NVEAAKKNEN VLASLQAASS AFAKVRQLEG GKGKYTNQLQ TLADEAINIA AKQAQDNYER
KNYKNASVAF EQVYRLSPRD TVFLYNAAVV SVENKDYDNA VKLYKELKDL GYDGAETLYL
ATNKQTKKEE TFPDKNQRDL MVKAGTHEKA RNEKTPSKRA DIVKNIAFIY VEQNKTDEAL
KAFAEARKAY PKDANIILAE ANVYLQLDNK EKFKQLMQEA AQLDPNNADL HYNIGVINMQ
QGNNIEARKA FEQALKIKPK YADATLNLST TYINEGNALV EQMNSLGNSA ADTKKFNELR
DQKEALFKKA AEVLESYVKA NGNDKNILEQ LKSIYGALSD SANFQRVKKL LGE
|
|---|
| |