Gene Coch_1925 details

Gene Information

• Locus tag: Coch_1925
• ID: 8368383
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Capnocytophaga ochracea DSM 7271
• Kingdom: Bacteria
• Replicon accession: NC_013162
• Strand: +
• Start bp: 2311465
• End bp: 2312142
• Gene Length: 678 bp
• Protein Length: 225 aa
• Translation table: 11
• GC content: 42%
• IMG OID: 644984377
• Product: short-chain dehydrogenase/reductase SDR
• Protein accession: YP_003142031
• Protein GI: 256820752
• COG category: [R] General function prediction only
• COG ID: [COG0300] Short-chain dehydrogenases of various substrate specificities

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.452035
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGAACA TTATCATAAC AGGTACCAGC AGAGGTATAG GCTTTGCGCT AGTACAACAG 
TTGGCTGCGG AAGGGCATAA CATTTTAGCC CTTTCGCGGC ATACTGCTAC TATAGAGGCA 
CTGCAATTGC CTAATGTGCA TTGTTTCCCT TTTGATATTA CAAAAACAGA AGACATACAA 
ACGGTAGTCA CTTATTTGCA ACAATGGCAG TGCGTGGATA TACTCATTCA TAACGCAGGA 
AAACTCATCA ATAAACCCTT TGAACAACTT ACTGAAACTG ACTTTTTAGA AGTGTATAAG 
GTAAATGTAT TCGGAGTGGC ACAACTCACT CAGAAAGTAT TGCCTTTTAT GAGGAATGGC 
TCGCACGTGG TAAGTATCAG CAGTATGGGA GGGGTACAAG GGAGTTTGAA GTTTGGCGGT 
TTGGCAGCGT ATAGTTCCTC CAAAGGTGCT CTTATTACCC TATCGGAACT TTTAGCCGAA 
GAATACAAAG AGCGCGGTAT CATCTTCAAC ACCTTAGCCT TAGGTGCGGT ACAGACCGAG 
ATGCTCACTG AAGCCTTCCC TGATTATAAA GCTAATATCA CCCCACAGCA AATGGCACGC 
TACATTGCCG ATTTTGCCCT TAATGGTAGT AAGGTATTCA ATGGAAAAGT ATTACAAGTA 
GCCAATACAA CTCCATAA 

 

Protein sequence

MKNIIITGTS RGIGFALVQQ LAAEGHNILA LSRHTATIEA LQLPNVHCFP FDITKTEDIQ 
TVVTYLQQWQ CVDILIHNAG KLINKPFEQL TETDFLEVYK VNVFGVAQLT QKVLPFMRNG 
SHVVSISSMG GVQGSLKFGG LAAYSSSKGA LITLSELLAE EYKERGIIFN TLALGAVQTE 
MLTEAFPDYK ANITPQQMAR YIADFALNGS KVFNGKVLQV ANTTP