Gene Coch_1899 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1899 
Symbol 
ID8368357 
TypeCDS 
Is gene splicedYes 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand+ 
Start bp2287121 
End bp2288225 
Gene Length1105 bp 
Protein Length367 aa 
Translation table11 
GC content44% 
IMG OID644984351 
Productpeptide chain release factor 2 
Protein accessionYP_003142005 
Protein GI256820726 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1186] Protein chain release factor B 
TIGRFAM ID[TIGR00020] peptide chain release factor 2 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0199155 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAACA ACGAACAAGT AAAGGATTTA GTGAATCGCC TGGGTGCGTT AAGGAGGTAT 
CTTTGACGTA GATGCCAAAC GCATTGAAAT AAGCAACGAA GAAGAAAAGA CTTTTGCACC 
TGACTTTTGG GACAATGCCA AAGAAGCTGA GAAAGTGATG CGCGAGCTTC GCACTAAAAA 
GAAATGGGTG GAAGACTATG AGGAAGCCGA AAATCTTACC TCGGATATAG AAGTACTACT 
TGACTTTTTT AAAGAAGGCG AAGCTACTGC GGAGGATGTA GACCACCAAT ACACCCAAGC 
CTTACACGCT ATTGAAGCAT TGGAGTTCCG CAATATGCTT TCGGACGAGG GCGATACGAT 
GAGTGCGGTA TTGCAAATTA CGGCAGGCGC AGGTGGTACT GAAAGCTGTG ACTGGGCATC 
GATGCTACTA CGTATGTACA CGATGTGGTG CAATAACCAA AAATATAAGG TAAAAACACT 
TAACTTCCAA GAAGGTGATG TGGCAGGAGT AAAAACCGTT ACCATAGAGA TTGAAGGCGA 
ATACGCTTTT GGCTACCTAA AAGGTGAAAA TGGCGTACAC CGATTGGTAC GCATCTCACC 
TTTTGATAGT AATGCTAAAC GCCATACCTC TTTTGCCTCG GTATACGTGT ATCCTTTGGT 
AGATGATACT ATTGAAATAG ATATTAATCC CGCTGATATT ACCTTTGAGA CGATGCGCTC 
CAGTGGTGCT GGCGGGCAGA ATGTAAACAA GGTAGAGACA GCTGTACGTT TGCGTCACCA 
CCCTACGGGT ATCATTATTG AGAATTCCGA AACCCGCAGT CAGTTGGATA ATAAGAACAA 
GGCGTTGCAA CTACTCAAAT CGCAGTTGTA TGAGATAGAG CTCAAAAAGC GTCAAGCCAA 
GCGCGATGAG ATAGAGGCAG GAAAGATGAA GATAGAATGG GGCTCACAAA TACGCAACTA 
TGTAATGCAC CCCTACAAAC TTGTGAAAGA CGTACGCACC AATTACGAAT CTACTGATGT 
AGATAGCGTA ATGAACGGTG AATTAGATGA GTTTCTCAAA GCCTACCTAA TGCTTATGGG 
TACGAGCCGT ACGGGCGATT TGTAA
 
Protein sequence
MTNNEQVKDL VNRLGALRRY FDVDAKRIEI SNEEEKTFAP DFWDNAKEAE KVMRELRTKK 
KWVEDYEEAE NLTSDIEVLL DFFKEGEATA EDVDHQYTQA LHAIEALEFR NMLSDEGDTM 
SAVLQITAGA GGTESCDWAS MLLRMYTMWC NNQKYKVKTL NFQEGDVAGV KTVTIEIEGE 
YAFGYLKGEN GVHRLVRISP FDSNAKRHTS FASVYVYPLV DDTIEIDINP ADITFETMRS 
SGAGGQNVNK VETAVRLRHH PTGIIIENSE TRSQLDNKNK ALQLLKSQLY EIELKKRQAK 
RDEIEAGKMK IEWGSQIRNY VMHPYKLVKD VRTNYESTDV DSVMNGELDE FLKAYLMLMG 
TSRTGDL