| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1894 |
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| Symbol | |
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| ID | 8368352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 2278510 |
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| End bp | 2281839 |
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| Gene Length | 3330 bp |
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| Protein Length | 1109 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 644984346 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003142000 |
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| Protein GI | 256820721 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.377763 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAAGAGT TATTACAATT ATTCGCAGAA AATAGTACTT ATAAAAGTTT ATTAACTGAA
ATTAAAGCAC ATCATAATAC CGTTGCCAAT GGTTTGGCAG GGGCTTCTCT GTCCTTACTC
ATAGCTAATG TTTATACTAA TACCAAGCGT CCGCTATTGA TACTCTTGCC CGACAAAGAA
GAAAGTGCCT ATTTGTTAAA CGACTTAGAG ACCTTAGTAG GCGAACAAGT ACTCTTCTTT
CCTGATAGCT ATCGCCGTCC GTATCAAATT GAAGATACCG ATAATGCCAA CGTGTTACTG
CGTGCTGAAG TGCTCAATCG GCTGAGCAAT AGTGGGCAAC CTCTGATAGT AGTCTCCTAC
CCCGAAGCGC TCTTCGAGAA AGTTATCACT CGTAAGCAAT TGGAGCAAAA TACCTTAAAG
ATTAGCAAAG GAGACCAACT AACCATTGAA CTCTTGAACG AAGTGCTTTT CTCCTATAAT
TTCAATCGCA CTGATTTTGT AACCGAACCT GGCGAGTTTT CAGTACGCGG AGGGATTGTT
GATGTTTTTT CTTTCTCAAA TAACGAACCT TACCGCATTG AATTCTTTGG CAATGAAGTA
GAAAGTATTC GCACCTTCGA TGTCGAAACA CAGCTCTCAA CAACACAGCT TTCTAAGATT
ACTATTATCC CTAACGTCGA AAACAAAGAA GGTAATGAGG TACGTCAGTC ATTTTTAGAG
TATATCAGCG AACAGACCCT TTTAATATCT AAGGAAACAT CTACTTTTGG AGCAAAAATC
GACAAGCTCT TCACTAAAGC TACTGACATT TACGAAAAGC TTCCTAATGA AGTAAAACAC
AGTACACCCG ATGTGCTATA TTGTCAATCA GAAGATTTAT TAAACCAAAT GGGGAGATTT
CAGCAAATAA ATATAAATCT TCCCTCATCT TTCTCCAAAG GCGAAAAAGA GATTGTTTTC
CGCACTACAC CACAGCCCTC ATTTAACAAG CAATTCGAGC TACTTATCAG TTATTTAAAC
GATAAACACA CTGAGGGATA CCAAAACTAT ATCCTCTGTG GCAGTGAGCA ACAAGCCAAA
CGCTTCCACG ACATCTTTGA GGAGATGGAA CAAAAAGTGC ATTACCAAAC ACTATTGTTT
TCTCTACACG CAGGCTTTAT AGATAATGAG CACAAGCTGA ATGTCTTTAC TGACCATCAA
ATATTTGAGC GTTACTACAA ATTCCAGCTG AAGAACGGAT ATGCTAAAAA ACAAGCTATC
ACGCTCAAAG AGTTAATGCA ATTAGAAGTA GGCGACTATG TAACCCACAT CGACCACGGT
ATTGGTAAGT TTGCTGGATT ACAGAAGATA GAGGTTGAAG GCAAGCAACA AGAGGCTATC
AAACTGATTT ACGGCGACCG CGATGTCCTA TTCGTAAGCA TTCACGCCCT ACATAAAATC
ACTAAATACA ACGGTAAGGA CGGCAAGCCA CCCAAGATAT ACAAATTAGG TTCTGGAGCC
TGGAAGGCGC TCAAGCAGAA GACAAAAACA AGAGTGAAGG AAATAGCCTT CAACTTGATT
CAGTTGTATG CTAAACGTAA GGAATCTAAA GGGTATGCAT ACTCTCACGA CAGCTATATG
CAGAACGAAC TGGAAGCCTC TTTCCTATAT GAAGATACAC CCGACCAAAG CAAAGCTACT
GCCGAAGTAA AAGCAGATAT GGAGAGTCCA AAACCTATGG ACAGATTGGT GTGTGGTGAT
GTTGGGTTTG GAAAAACCGA AGTAGCTATT CGCGCTGCCT TCAAAGCGGT AGACAACGGC
AAGCAGGTAG CGGTATTAGT ACCTACTACG GTACTCGCTT TTCAGCACTT TCAAACCTTT
AGCCAGCGTA TGAAAGACTT CCCTGTGCGC ATTGATTATC TTAACCGATT CCGCACAGCT
AAAGAAAAAA AAATCATCTT AGAAGAACTG GCAAATGGTC AGTTAGATAT CATCATCGGA
ACTCATCAGA TAGTAGGCGA AAAAGTAGCT TATAAAGATT TAGGTCTACT GATAGTAGAC
GAAGAGCAAA AGTTTGGTGT AGGCGTAAAG GATAAGCTCA AAACTCTCAA AGAAAACCTC
GATGTGCTCA CCCTCACTGC TACACCTATC CCCCGAACCT TACAGTTCAG CTTAATGGCA
GCTCGCGACC TATCAGTAAT CAATACACCA CCCCCTAACC GCTACCCTAT CGATTCTCAG
GTAGTTCCTT TCAGCGAAGA GATAATACGC GATGGCATTC GTTATGAAAT TCAGCGAGGC
GGACAAGTGT TCTTTATGCA CAACCGTGTA GAGAATATTC AGGAAGTAGC AGGTATGATT
CAACGCCTAT TACCCGATGC CCGTGTAGCC ATTGGTCACG GACAAATGGA CGGAAAAAAA
TTAGAAGAAA CAATGTTAGC CTTTATGGAC GGTGCTTACG ATGTATTAGT AGCTACTACT
ATCATTGAAA ATGGTTTAGA TGTACCCAAT GCTAATACCA TCTTTATCAA TAATGCACAT
AATTTTGGCT TATCCGATTT ACATCAAATG CGTGGACGTG TAGGTAGAAG TAATAAAAAA
GCTTTTTGTT ATTTCATCAC CCCTCCGTTG GTAGCGATGA GTGATGGTGC TCGAAAGCGT
ATTGAAGCTA TAGCTCAGTT CTCTGATTTG GGAAGCGGGT TAAATATTGC TATGAAGGAT
TTAGAAATTC GTGGAGCTGG AGACCTCTTA GGCGGGGAAC AAAGTGGATT TATCAATGAG
TTAGGCTTCG AAACTTATCA GAAAATATTG CAAGAAGCTA TAGTAGAGCT CAAAGAAAAT
GAGTTCTCAG AACTATATCA CACTGCCGAA GAAGATAAAA CTTACCTCAC CGATACTCAA
ATAGACACCG ATTTTGAATT GCTCTTTCCG GATACCTATG TCAATAGAGT GGCAGAACGA
CTCAATCTTT ATAATGAACT GAGTAATTTA CCCAATGAGG AAGCTTTACA GCAGTACCAA
CGGAATCTTA CCGACCGTTT TGGCAAACTT CCTCCCCAAG CTATCGACTT GCTCAACAGT
GTGCGAGTGA AATGGTTGGC TACTCGTATG GGAATTGAAA AGCTCGTGAT GAAAAACGGT
AAGATGACAG GCTATTTTAT CTCCGACCAA AACAGTCCAT TTTACCAAAG TGAGCGTTTT
CAAAAGGTGC TACTCTTTGT ACAACGTTAC CCTAACAGGT GTCGTATGCA AGAGAAAGAA
ACCCGTAACG GGTTGCGTTT GCTCCTTATT TTTGAAGGAA TCAATACTGT GTATCAAGCC
TTAAAAGTAA TGCAGTTATT AGATGCATAG
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| Protein sequence | MKELLQLFAE NSTYKSLLTE IKAHHNTVAN GLAGASLSLL IANVYTNTKR PLLILLPDKE
ESAYLLNDLE TLVGEQVLFF PDSYRRPYQI EDTDNANVLL RAEVLNRLSN SGQPLIVVSY
PEALFEKVIT RKQLEQNTLK ISKGDQLTIE LLNEVLFSYN FNRTDFVTEP GEFSVRGGIV
DVFSFSNNEP YRIEFFGNEV ESIRTFDVET QLSTTQLSKI TIIPNVENKE GNEVRQSFLE
YISEQTLLIS KETSTFGAKI DKLFTKATDI YEKLPNEVKH STPDVLYCQS EDLLNQMGRF
QQININLPSS FSKGEKEIVF RTTPQPSFNK QFELLISYLN DKHTEGYQNY ILCGSEQQAK
RFHDIFEEME QKVHYQTLLF SLHAGFIDNE HKLNVFTDHQ IFERYYKFQL KNGYAKKQAI
TLKELMQLEV GDYVTHIDHG IGKFAGLQKI EVEGKQQEAI KLIYGDRDVL FVSIHALHKI
TKYNGKDGKP PKIYKLGSGA WKALKQKTKT RVKEIAFNLI QLYAKRKESK GYAYSHDSYM
QNELEASFLY EDTPDQSKAT AEVKADMESP KPMDRLVCGD VGFGKTEVAI RAAFKAVDNG
KQVAVLVPTT VLAFQHFQTF SQRMKDFPVR IDYLNRFRTA KEKKIILEEL ANGQLDIIIG
THQIVGEKVA YKDLGLLIVD EEQKFGVGVK DKLKTLKENL DVLTLTATPI PRTLQFSLMA
ARDLSVINTP PPNRYPIDSQ VVPFSEEIIR DGIRYEIQRG GQVFFMHNRV ENIQEVAGMI
QRLLPDARVA IGHGQMDGKK LEETMLAFMD GAYDVLVATT IIENGLDVPN ANTIFINNAH
NFGLSDLHQM RGRVGRSNKK AFCYFITPPL VAMSDGARKR IEAIAQFSDL GSGLNIAMKD
LEIRGAGDLL GGEQSGFINE LGFETYQKIL QEAIVELKEN EFSELYHTAE EDKTYLTDTQ
IDTDFELLFP DTYVNRVAER LNLYNELSNL PNEEALQQYQ RNLTDRFGKL PPQAIDLLNS
VRVKWLATRM GIEKLVMKNG KMTGYFISDQ NSPFYQSERF QKVLLFVQRY PNRCRMQEKE
TRNGLRLLLI FEGINTVYQA LKVMQLLDA
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