Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Coch_1892 |
Symbol | |
ID | 8368350 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Capnocytophaga ochracea DSM 7271 |
Kingdom | Bacteria |
Replicon accession | NC_013162 |
Strand | - |
Start bp | 2272468 |
End bp | 2275356 |
Gene Length | 2889 bp |
Protein Length | 962 aa |
Translation table | 11 |
GC content | 38% |
IMG OID | 644984344 |
Product | TonB-dependent receptor plug |
Protein accession | YP_003141998 |
Protein GI | 256820719 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.281222 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAACAGA AAATACAACT TTTATTAATC TCGCTGTTCC TATTTGTAGG AGCTGTTCAA GCACAGATGA AAAACATTAC TGGGGAAGTT CTCGATGAGA ACAATCAACC TATGTCATCG GTTGCGGTAG TTGTTAAAAA CACACGTTCA ACGAAAGCTT CTAAAGACGT TTCAACTAAT ACAGATGGTA AGTTTGAGCT CAAAGCTAAA GTAGGTGATG TACTTGAGTT TAGTTTTTTA GGATATGAAC CCCAGCAAAG AAAAGTAGAG GGTAAAAATA GGAATATTAA CTTTAAGGTA GTCTTAAAGC CTCAAATAAT AGAGCATATT GATCATATCC TAATAGGTAA GCCAAAATAT TCTACTGCTC TAGGAATTTA TCAAGAAGGG GAAGTTTTAC CCTATCAACA ACAAAAAGTT TCAGACAAGG ACCTCACTCA AGTCAAGCAA GCAAATTTTG TAAATAGTCT TGATGGTAAG GTTGCAGGTT TGCACATCCA GCGGAGTGCT ACGGGTATTG GTGGGGCTAC AAAAGCTACT ATGCGTGGAG CTCGTTCTCT CTTTGGTGAT AATAATGTAC TGTACGTGAT AGATGGAATG CCCATCGCTA ACCAAGCTGA AAGAGGTATT GGAGGTGATG GTAGAGATAC CAGCGAAGGT ATTTCTGACC TTAATCCTGA GGATATTGAA GAAGTAGTTG TATTACAAGG AGCGCAAGCA GCAGCACTCT ATGGAGCTTC AGCTGCCAAT GGTGTGGTAC TCATTCGCAC TAAAAAAGCT GAAAGTAACC AATTTAAAAT TAACCTTTCT TCTTCAATAG AGTTTGTAAA TAAACTCACA AAGCCTGAGT TTCAAGAAAC ATATGGCAAT GAGTTAGGGC AATACACTTC ACTGTCCACT CGTGCTTTGC CTAAGGGTAC TTCTTTTAAT ATAAATGATT TTTATAAAAC CGGACACGTG TACCAGAATG CAGTAAGCAT TTCAGGAGGT ATAGATTTTA AGGGAGGTAA GAATAAAACT TACGCTTCAT TAGCTTCTTT ACAATCAGGT GGTATAGTGC CTAACAGCGT ATATAACCGC TATAATGCTT ATTTGCACAA TAGCACTTCT TTGCTAAATG ATGCTTTACG GATAGACCTT TCGGGGAACT ATATCCGTCA GTATGAACGC AATCAAGTAG CCTCTGGTAT CGTTTTCAAT CCTATAGTGG GCTTGTACTT ATACCCAAGA GGAGAACAAT TTGGTCAAGA ACGTTATTTT GAACGTTATG ATGCTATCGC AGGTTATGCT AAGCAATATT GGATTGCAGG TTCAGGTACG CCCGATACAC CGGCTAACTT AGGTGAAAAT ATCCAAAATC CTTATTGGAT AGCGTACAGA AATTTACGTC CTACTACTAA AGACCGATAT ATGTTTTCAG GCAAAGTAAG CTATAAAATT ATAGGAGATT TAGACGTAGT AGCACGCTTC CGTATAGATA ATACTACCTC TACAATGGAC GATAAGCGTT ATGCTTCTAC GCTTCTCGCT TATGCAGGCG TTAATGGTTA TTATGCTCAT TGGAAAGAGA CTTTCAAACA ACAATATGCC GATGTGCTCT TACATTACAA TAAAAATTTA TCGAATGACT TCAGTTTAGA TGTTCATTTA GGAGCTTCGT ATGAAAGGCA TAACACTCAA GTAGAAGGTT ACAAAGGTAA TCTGTATAAC ATAAATAATT TTACTCAAAC CAATATCACA GCTCCTACAG CTATAACCCA CCCATTGTGG GGAAAACGGA ATAACACAGC CTTCTTTGCA ATAGCTGAAA TAGGTTGGCA ATCTAAGATT TATCTCACTC TCACAGGTCG TACTGATAAA CCGTCCGATT ATCTCTTTAC AAGTAAAAAT AAGGTCTTCA GTCCATCAGT AGGTGTTTCG GCATTGTTAC ATCAATTTAT AGGTATAGAT AAAAGCATAT TAAGTTTTGC AAAATTGCGT GGTGGTTACA GCCAAGTAGC AGCTCCTATG AGTTATGCGG GCTTAGGGGT AGCTGAAACG TCTCGCTCTT GGTTAGGTGA TGCGTATAGT TTGCCTAACT ACTCTACTGA TTTACAGTTA GAACGTACTA CTTCTTATGA AGTAGGCTTG GATACCCAAT GGTTTAACAA TCTTTCTTTT AACGCTACTT TCTATCATAC TCGTACTAAT AATCAATTAG TACCTATTGT ATGGCAACAA GCAGGTGAAG TGCAAAATCA AGGAGCAGAA GTTGCTTTAA GGTATACTTA TCCTAATACT TCTAAAGGGG TAAATTGGGA AACTCAGCTT GTTGCTTCTA CTAATAAGAA CAAGATTGTG AGTTTACCTC ACGAGATAGC CAATGGTATG TATACCTTAC ATGAAGGTGG TGAAATAGGC GATATATTTG ATGCGAATGG CAACAAATTA GGCTCTACCA ATCCTGATTG GCTACTAGGC TGGCAAGGAA AGATGAGTTA TAAGAATTTC GATTTGAATT TCTTGTTTAA AGCGCGTTTG GGAGGAATAG TTCTTTCAGA AACAGAACGT TATTTCGATC GCTATGGAGT GTCTAAAGCC TCTGCCGATA ACCGAGCTAA CTATGCTACT TTCATAGCTA ATAGAACAGC TTCTGATTAT CAATATTCGG CTACCAATAT TCGTCTACAA GAAGTTGCCC TTACTTATCA TTTTAGAGAA GGATTCATTG TAAAAGGCTT AAAAGACCTC AGTGTGTCAT TAGTAGGTCA TAACCTGCTA ATGCTCTATA ACAAAGCATC TTTTGACCCC GAAATAGTGC CTTCTGTAGG TACTTATGGC AGTGGATACG ACAAATTTAT GTTGCCTTCC ATAAGAAGCT ATGGACTTAA TGTGAAAATG CAATTCTAA
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Protein sequence | MKQKIQLLLI SLFLFVGAVQ AQMKNITGEV LDENNQPMSS VAVVVKNTRS TKASKDVSTN TDGKFELKAK VGDVLEFSFL GYEPQQRKVE GKNRNINFKV VLKPQIIEHI DHILIGKPKY STALGIYQEG EVLPYQQQKV SDKDLTQVKQ ANFVNSLDGK VAGLHIQRSA TGIGGATKAT MRGARSLFGD NNVLYVIDGM PIANQAERGI GGDGRDTSEG ISDLNPEDIE EVVVLQGAQA AALYGASAAN GVVLIRTKKA ESNQFKINLS SSIEFVNKLT KPEFQETYGN ELGQYTSLST RALPKGTSFN INDFYKTGHV YQNAVSISGG IDFKGGKNKT YASLASLQSG GIVPNSVYNR YNAYLHNSTS LLNDALRIDL SGNYIRQYER NQVASGIVFN PIVGLYLYPR GEQFGQERYF ERYDAIAGYA KQYWIAGSGT PDTPANLGEN IQNPYWIAYR NLRPTTKDRY MFSGKVSYKI IGDLDVVARF RIDNTTSTMD DKRYASTLLA YAGVNGYYAH WKETFKQQYA DVLLHYNKNL SNDFSLDVHL GASYERHNTQ VEGYKGNLYN INNFTQTNIT APTAITHPLW GKRNNTAFFA IAEIGWQSKI YLTLTGRTDK PSDYLFTSKN KVFSPSVGVS ALLHQFIGID KSILSFAKLR GGYSQVAAPM SYAGLGVAET SRSWLGDAYS LPNYSTDLQL ERTTSYEVGL DTQWFNNLSF NATFYHTRTN NQLVPIVWQQ AGEVQNQGAE VALRYTYPNT SKGVNWETQL VASTNKNKIV SLPHEIANGM YTLHEGGEIG DIFDANGNKL GSTNPDWLLG WQGKMSYKNF DLNFLFKARL GGIVLSETER YFDRYGVSKA SADNRANYAT FIANRTASDY QYSATNIRLQ EVALTYHFRE GFIVKGLKDL SVSLVGHNLL MLYNKASFDP EIVPSVGTYG SGYDKFMLPS IRSYGLNVKM QF
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