Gene Coch_1892 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1892 
Symbol 
ID8368350 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand
Start bp2272468 
End bp2275356 
Gene Length2889 bp 
Protein Length962 aa 
Translation table11 
GC content38% 
IMG OID644984344 
ProductTonB-dependent receptor plug 
Protein accessionYP_003141998 
Protein GI256820719 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.281222 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAACAGA AAATACAACT TTTATTAATC TCGCTGTTCC TATTTGTAGG AGCTGTTCAA 
GCACAGATGA AAAACATTAC TGGGGAAGTT CTCGATGAGA ACAATCAACC TATGTCATCG
GTTGCGGTAG TTGTTAAAAA CACACGTTCA ACGAAAGCTT CTAAAGACGT TTCAACTAAT
ACAGATGGTA AGTTTGAGCT CAAAGCTAAA GTAGGTGATG TACTTGAGTT TAGTTTTTTA
GGATATGAAC CCCAGCAAAG AAAAGTAGAG GGTAAAAATA GGAATATTAA CTTTAAGGTA
GTCTTAAAGC CTCAAATAAT AGAGCATATT GATCATATCC TAATAGGTAA GCCAAAATAT
TCTACTGCTC TAGGAATTTA TCAAGAAGGG GAAGTTTTAC CCTATCAACA ACAAAAAGTT
TCAGACAAGG ACCTCACTCA AGTCAAGCAA GCAAATTTTG TAAATAGTCT TGATGGTAAG
GTTGCAGGTT TGCACATCCA GCGGAGTGCT ACGGGTATTG GTGGGGCTAC AAAAGCTACT
ATGCGTGGAG CTCGTTCTCT CTTTGGTGAT AATAATGTAC TGTACGTGAT AGATGGAATG
CCCATCGCTA ACCAAGCTGA AAGAGGTATT GGAGGTGATG GTAGAGATAC CAGCGAAGGT
ATTTCTGACC TTAATCCTGA GGATATTGAA GAAGTAGTTG TATTACAAGG AGCGCAAGCA
GCAGCACTCT ATGGAGCTTC AGCTGCCAAT GGTGTGGTAC TCATTCGCAC TAAAAAAGCT
GAAAGTAACC AATTTAAAAT TAACCTTTCT TCTTCAATAG AGTTTGTAAA TAAACTCACA
AAGCCTGAGT TTCAAGAAAC ATATGGCAAT GAGTTAGGGC AATACACTTC ACTGTCCACT
CGTGCTTTGC CTAAGGGTAC TTCTTTTAAT ATAAATGATT TTTATAAAAC CGGACACGTG
TACCAGAATG CAGTAAGCAT TTCAGGAGGT ATAGATTTTA AGGGAGGTAA GAATAAAACT
TACGCTTCAT TAGCTTCTTT ACAATCAGGT GGTATAGTGC CTAACAGCGT ATATAACCGC
TATAATGCTT ATTTGCACAA TAGCACTTCT TTGCTAAATG ATGCTTTACG GATAGACCTT
TCGGGGAACT ATATCCGTCA GTATGAACGC AATCAAGTAG CCTCTGGTAT CGTTTTCAAT
CCTATAGTGG GCTTGTACTT ATACCCAAGA GGAGAACAAT TTGGTCAAGA ACGTTATTTT
GAACGTTATG ATGCTATCGC AGGTTATGCT AAGCAATATT GGATTGCAGG TTCAGGTACG
CCCGATACAC CGGCTAACTT AGGTGAAAAT ATCCAAAATC CTTATTGGAT AGCGTACAGA
AATTTACGTC CTACTACTAA AGACCGATAT ATGTTTTCAG GCAAAGTAAG CTATAAAATT
ATAGGAGATT TAGACGTAGT AGCACGCTTC CGTATAGATA ATACTACCTC TACAATGGAC
GATAAGCGTT ATGCTTCTAC GCTTCTCGCT TATGCAGGCG TTAATGGTTA TTATGCTCAT
TGGAAAGAGA CTTTCAAACA ACAATATGCC GATGTGCTCT TACATTACAA TAAAAATTTA
TCGAATGACT TCAGTTTAGA TGTTCATTTA GGAGCTTCGT ATGAAAGGCA TAACACTCAA
GTAGAAGGTT ACAAAGGTAA TCTGTATAAC ATAAATAATT TTACTCAAAC CAATATCACA
GCTCCTACAG CTATAACCCA CCCATTGTGG GGAAAACGGA ATAACACAGC CTTCTTTGCA
ATAGCTGAAA TAGGTTGGCA ATCTAAGATT TATCTCACTC TCACAGGTCG TACTGATAAA
CCGTCCGATT ATCTCTTTAC AAGTAAAAAT AAGGTCTTCA GTCCATCAGT AGGTGTTTCG
GCATTGTTAC ATCAATTTAT AGGTATAGAT AAAAGCATAT TAAGTTTTGC AAAATTGCGT
GGTGGTTACA GCCAAGTAGC AGCTCCTATG AGTTATGCGG GCTTAGGGGT AGCTGAAACG
TCTCGCTCTT GGTTAGGTGA TGCGTATAGT TTGCCTAACT ACTCTACTGA TTTACAGTTA
GAACGTACTA CTTCTTATGA AGTAGGCTTG GATACCCAAT GGTTTAACAA TCTTTCTTTT
AACGCTACTT TCTATCATAC TCGTACTAAT AATCAATTAG TACCTATTGT ATGGCAACAA
GCAGGTGAAG TGCAAAATCA AGGAGCAGAA GTTGCTTTAA GGTATACTTA TCCTAATACT
TCTAAAGGGG TAAATTGGGA AACTCAGCTT GTTGCTTCTA CTAATAAGAA CAAGATTGTG
AGTTTACCTC ACGAGATAGC CAATGGTATG TATACCTTAC ATGAAGGTGG TGAAATAGGC
GATATATTTG ATGCGAATGG CAACAAATTA GGCTCTACCA ATCCTGATTG GCTACTAGGC
TGGCAAGGAA AGATGAGTTA TAAGAATTTC GATTTGAATT TCTTGTTTAA AGCGCGTTTG
GGAGGAATAG TTCTTTCAGA AACAGAACGT TATTTCGATC GCTATGGAGT GTCTAAAGCC
TCTGCCGATA ACCGAGCTAA CTATGCTACT TTCATAGCTA ATAGAACAGC TTCTGATTAT
CAATATTCGG CTACCAATAT TCGTCTACAA GAAGTTGCCC TTACTTATCA TTTTAGAGAA
GGATTCATTG TAAAAGGCTT AAAAGACCTC AGTGTGTCAT TAGTAGGTCA TAACCTGCTA
ATGCTCTATA ACAAAGCATC TTTTGACCCC GAAATAGTGC CTTCTGTAGG TACTTATGGC
AGTGGATACG ACAAATTTAT GTTGCCTTCC ATAAGAAGCT ATGGACTTAA TGTGAAAATG
CAATTCTAA
 
Protein sequence
MKQKIQLLLI SLFLFVGAVQ AQMKNITGEV LDENNQPMSS VAVVVKNTRS TKASKDVSTN 
TDGKFELKAK VGDVLEFSFL GYEPQQRKVE GKNRNINFKV VLKPQIIEHI DHILIGKPKY
STALGIYQEG EVLPYQQQKV SDKDLTQVKQ ANFVNSLDGK VAGLHIQRSA TGIGGATKAT
MRGARSLFGD NNVLYVIDGM PIANQAERGI GGDGRDTSEG ISDLNPEDIE EVVVLQGAQA
AALYGASAAN GVVLIRTKKA ESNQFKINLS SSIEFVNKLT KPEFQETYGN ELGQYTSLST
RALPKGTSFN INDFYKTGHV YQNAVSISGG IDFKGGKNKT YASLASLQSG GIVPNSVYNR
YNAYLHNSTS LLNDALRIDL SGNYIRQYER NQVASGIVFN PIVGLYLYPR GEQFGQERYF
ERYDAIAGYA KQYWIAGSGT PDTPANLGEN IQNPYWIAYR NLRPTTKDRY MFSGKVSYKI
IGDLDVVARF RIDNTTSTMD DKRYASTLLA YAGVNGYYAH WKETFKQQYA DVLLHYNKNL
SNDFSLDVHL GASYERHNTQ VEGYKGNLYN INNFTQTNIT APTAITHPLW GKRNNTAFFA
IAEIGWQSKI YLTLTGRTDK PSDYLFTSKN KVFSPSVGVS ALLHQFIGID KSILSFAKLR
GGYSQVAAPM SYAGLGVAET SRSWLGDAYS LPNYSTDLQL ERTTSYEVGL DTQWFNNLSF
NATFYHTRTN NQLVPIVWQQ AGEVQNQGAE VALRYTYPNT SKGVNWETQL VASTNKNKIV
SLPHEIANGM YTLHEGGEIG DIFDANGNKL GSTNPDWLLG WQGKMSYKNF DLNFLFKARL
GGIVLSETER YFDRYGVSKA SADNRANYAT FIANRTASDY QYSATNIRLQ EVALTYHFRE
GFIVKGLKDL SVSLVGHNLL MLYNKASFDP EIVPSVGTYG SGYDKFMLPS IRSYGLNVKM
QF