| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1886 |
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| Symbol | carB |
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| ID | 8368339 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 2259180 |
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| End bp | 2262032 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 644984333 |
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| Product | carbamoyl phosphate synthase large subunit |
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| Protein accession | YP_003141992 |
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| Protein GI | 256820713 |
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| COG category | [E] Amino acid transport and metabolism
[F] Nucleotide transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
[COG4770] Acetyl/propionyl-CoA carboxylase, alpha subunit |
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| TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.964164 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTAAAA GAAACGACCT ACATTGTGTT CTGCTCATTG GGTCAGGACC TATCATCATT
GGGCAAGCCT GTGAGTTTGA CTACTCAGGC TCGCAATCGT TGCGCTCTTT GCGCGAAGAC
GGTATTAAAA CCATCCTTAT TAACTCTAAC CCTGCTACCA TTATGACAGA CCCGTCTATG
GCGGATGTGG TTTATCTGAA ACCTCTCACC ACTAAGTCAT TGGTGGAAAT TCTAAAAGCA
CACCCCGAAA TAGATGCCGT TCTCCCTACT ATGGGCGGAC AAACAGCGCT TAACCTCTGT
ATTGAGGCTG ACGAGAAAGG CATTTGGAAA GACTTTGGGG TAGAAATCAT CGGGGTAGAT
ATTGATGCCA TACAAATCAC TGAAGACCGC GAGAAATTCC GCGTGTTGCT CGATGAAATC
GGTATCCCTA TGGCACCGTC CGAAACGGCT ACTTCTTTCC TTAAAGGAAA AGAAATTGCG
CAACGCTTTG GTTTTCCACT CGTAATACGT CCGTCCTTTA CTTTAGGTGG CACCGGGGCT
TCTATCGTCT ATAAAAAAGA AGATTTTGAT ATGCTCCTCA ATCGTGGTTT GGAAGCCTCG
CCTATCCACG AGGTGCTTAT CGATAAGGCG CTTTTAGGCT GGAAGGAATA CGAGCTCGAG
CTTTTGCGCG ACAAGAACGA TAATGTGGCA ATTATCTGTA CTATCGAAAA TATGGATCCT
ATGGGTATCC ACACTGGGGA TTCTATTACC GTAGCCCCTG CGATGACTCT ATCAGATCGC
ACTTTCCAGC ATATGCGCGA TATGGCTATT AAGATGATGC GTAGTATAGG CGATTTTGCA
GGTGGCTGCA ATGTGCAGTT TGCCGTGTCG CCTGATGAAA AGGAAGATAT TATCGCTATT
GAAATCAACC CACGTGTATC GCGCTCATCC GCTTTGGCTT CTAAGGCTAC GGGTTATCCT
ATTGCTAAGA TTGCCACCAA ACTAGCTATC GGTTACCATT TAGACGAACT GCAAAACCAA
ATCACCAAAT CTACCTCAGC TTTCTTTGAG CCTACGTTAG ATTATGTGAT TGTGAAAATA
CCGCGTTGGA ACTTTGACAA GTTTGAAGGC TCTGACCGAA CTATAGGCTT GCAAATGAAA
TCAGTAGGCG AAGTAATGGG TATAGGGCGT TCTTTCCAAG AGGCATTGCA GAAAGCAACC
CAATCGCTCG AAATCAAACG CAATGGTTTG GGAGCTGATG GCAAAGGCTA TAAGAATTAC
GAACAGATTA TTGAGAAACT TACCTACCCC AGCTGGGATA GGGTATTCGT GCTCTACGAT
GCGGTACAGA TGGGTATTCC GCTGAGCCGT ATACACGAAA TCACCAAGAT AGATATGTGG
TTCCTCAAGC AATACGAAGA ACTATGTGTG CTCGAAAAAG AAATATCACG CTACAAAATA
GATACCCTAC CTAAAGAACT CCTTTTTGAA GCTAAACAAA AAGGGTTTGC CGACCGACAA
ATTGCTTATA TGGTGGGCTG TTGGGAGAGC GAAGTACACA AGAAACGCGA AGAACTCAAC
ATACGCCGTG TATTCAAATT AGTAGATACT TGTGCTGCTG AGTTTAAGGC GCAAACTCCT
TATTATTATT CTACTTTTGA GGCGTCTATC CGCACGGCTG ACGGCAAGGA ATACGTAGCT
AACGACAGTA TAGTAACCGA CCGCAAAAAG GTGGTAGTTC TCGGTTCAGG ACCTAATCGC
ATAGGGCAAG GTATTGAGTT CGACTACTGC TGTGTACACG GGGTATTAGC GGCTAAAGAA
TGTGGTTATG AAACTATAAT GATAAACTGT AACCCTGAGA CTGTTTCCAC AGACTTTGAT
ACAGCTGATA AGCTCTATTT TGAGCCAGTG TTCTGGGAGT ATATCTATGA TATCATTCAG
CACGAAAAAC CAGAAGGCGT AATTGTACAG CTCGGCGGAC AAACAGCACT CAAATTGGCT
GAGAAATTAG ATAAATATGG CATTAAAATT ATAGGTACTA GCTTCCAGTC ACTGGATTTA
GCAGAAGATA GAGGTAGTTT TTCAACGCTA CTGAAAGAGA ATAACATTCC TTATCCACGC
TTTGGGGTAG CTGAAACCGC TGATGAGGCA TTAAAACTCT CTGATGAATT GGATTTCCCA
CTACTCGTGC GTCCTTCGTA TGTATTGGGC GGACAAGGAA TGAAGATTGT TATCAACAAA
GAAGAGTTGG AAGCCCACGT GGTAGACCTC TTGCGTAAGA TACCTAACAA CAAACTCCTA
CTCGACCACT ATTTAGACGG CGCCATAGAA GCTGAAGCCG ATGCGATATG CGATGGCGAG
AATGTGTATA TCATTGGTAT TATGGAGCAT ATAGAGCCTT GTGGTATTCA CTCAGGCGAT
AGTAACGCTA CCTTGCCACC GTTCAACTTG GGTGAATTTG TATTGCAACA AATAAAAGAT
CATACTCATA AAATAGCCTT AGCACTCAAT ACGGTAGGGC TTATCAATGT GCAGTTTGCC
GTAAAAGACG ATATAGTGTA TATCATTGAG GCAAACCCAC GTGCTTCGCG TACAGTGCCG
TTTATCTCTA AAGCTTACCA AGAGCCGTAT GTAAACTATG CTACCAAAGT AATGCTGGGA
GAGAAGAAGC TCACTGATTT TCATTTCAAT CCGCACTTAG AGGGCTTTGC TATCAAGCAA
CCTGTGTTCT CGTTCAACAA ATTCCCGAAT GTAGATAAGA AGCTCGGTCC TGAAATGAAA
TCTACCGGCG AAAGTATCTT GTTTATAGAT AGCCTTAAAG ATGATGCTTT CTACGATATT
TATACAAGGA GGAAGATGTA TCTTTCAAAA TAA
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| Protein sequence | MPKRNDLHCV LLIGSGPIII GQACEFDYSG SQSLRSLRED GIKTILINSN PATIMTDPSM
ADVVYLKPLT TKSLVEILKA HPEIDAVLPT MGGQTALNLC IEADEKGIWK DFGVEIIGVD
IDAIQITEDR EKFRVLLDEI GIPMAPSETA TSFLKGKEIA QRFGFPLVIR PSFTLGGTGA
SIVYKKEDFD MLLNRGLEAS PIHEVLIDKA LLGWKEYELE LLRDKNDNVA IICTIENMDP
MGIHTGDSIT VAPAMTLSDR TFQHMRDMAI KMMRSIGDFA GGCNVQFAVS PDEKEDIIAI
EINPRVSRSS ALASKATGYP IAKIATKLAI GYHLDELQNQ ITKSTSAFFE PTLDYVIVKI
PRWNFDKFEG SDRTIGLQMK SVGEVMGIGR SFQEALQKAT QSLEIKRNGL GADGKGYKNY
EQIIEKLTYP SWDRVFVLYD AVQMGIPLSR IHEITKIDMW FLKQYEELCV LEKEISRYKI
DTLPKELLFE AKQKGFADRQ IAYMVGCWES EVHKKREELN IRRVFKLVDT CAAEFKAQTP
YYYSTFEASI RTADGKEYVA NDSIVTDRKK VVVLGSGPNR IGQGIEFDYC CVHGVLAAKE
CGYETIMINC NPETVSTDFD TADKLYFEPV FWEYIYDIIQ HEKPEGVIVQ LGGQTALKLA
EKLDKYGIKI IGTSFQSLDL AEDRGSFSTL LKENNIPYPR FGVAETADEA LKLSDELDFP
LLVRPSYVLG GQGMKIVINK EELEAHVVDL LRKIPNNKLL LDHYLDGAIE AEADAICDGE
NVYIIGIMEH IEPCGIHSGD SNATLPPFNL GEFVLQQIKD HTHKIALALN TVGLINVQFA
VKDDIVYIIE ANPRASRTVP FISKAYQEPY VNYATKVMLG EKKLTDFHFN PHLEGFAIKQ
PVFSFNKFPN VDKKLGPEMK STGESILFID SLKDDAFYDI YTRRKMYLSK
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