| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1862 |
|---|
| Symbol | |
|---|
| ID | 8368310 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2227807 |
|---|
| End bp | 2229735 |
|---|
| Gene Length | 1929 bp |
|---|
| Protein Length | 642 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 644984304 |
|---|
| Product | Peptidoglycan-binding LysM |
|---|
| Protein accession | YP_003141968 |
|---|
| Protein GI | 256820689 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.746272 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACAAC TTTTTACATT AGCTTTGTTA TTGTGCTTAG GAGTTGCCTA TGCACAACCG
CAAACGTACA CAGCAAATAA CTATGAAAGT ATTGAAAATA TAGCTAAGAC CTATCGCTTT
TCGCCCGCTG ACATCTTAAA ACTCAACCCA GGGCTTAAAG ATGGAGTACA AAAGGGAATG
ACTATCAATA TTCCTATCAG TAAAGTGAAG CATTACAATA CCCAACGTCC TGTAGGGTTT
ACGACTCACT TGGTAAAAGG GGGTGAGACT TTCTTTGGTC TGTCGCAAAA ATACAACATC
ACTATTGATG ATTTAAAGCG TTATAATTTA GACCTCTATA TAAGAGAGTT ACAAGAGGGT
GAGCGCATTA CAATTCCGCT ATTTAGCAAA ACAGCTGAAA TGGTACAGAA AAGCGTACAA
GGACAAAAGC GGTACGTAGT AAAACCGCAA GAAACACTTT GGCGCATTGC TAAAAATCAC
AATGTGAGTG TAGAAGAATT GGAAAAGTTG AACAAAAACG AAAAAGGTTT CAACCCTAAT
AGTATAAGAG AAGGGCAAGA AATCTGGGTG CCAGCCTCTT CTACCGATAG TACAGAGCCT
GAACCACCAG CTCGCCCTAA TACTAAGAAA GAAGTGGTGC TTTACCTTGT GGAGAGAGGG
GAAGGATTTT ACAGCTTAGA ACGCAAGTTC GGTTTATCGG AAGCTGAACT TGTGAAACTA
AATCCTAGTC TTAAAGATGG ATTGAAAAGC GATGCTCAAA TATGGATACC CAAAGAGAAT
TACGAACACT ATAAAAGTGC TTCACAGAAT AATACAGCAA ACTACAACTT TCAGAATTCT
AACAATACCT TGCGTTCAGC ATCTTCACCA GCCAATGTGA AGGAGATATC TTATATTTTA
CCCTTTAAAC TATCGGATGT CAGCACTGGA CAAATTGCTA TTATAAAATC TCGACTTACT
GAAAACAAAC TAACTCCTGT GGCTACCGAT TTCTATTCAG GAGCTCTAAT AGCTTTGGAT
TCTCTTCAAA AAATGGGATA TAAGTTTAAA GTGAATGTAT ACGATAGTGA AGGAGACTTA
AAGAAGATAG CTTCTAACGC CTCAGTACAG AACTCACAAG TAGTAATAGG TCCTTTTACC
ACGAAATCGT TTAATACTTT AGCATCATTG GTTACAAATA ACAATACGAT ATTATTAGCT
CCTTTATCTA ATAAGAATAT AACTCTCAAT CCTAATGTGT ATCAGACCTT ACCGAACGAT
GAGGTGTTAC AAGCACAAAT GATTGACTAT CTGAATAAAA ACTATTCAGA TGAGAATATG
ATTATCTTAG CTGATAGCAA GAATAGTTCT TTGCGTGAGA AATTAGAGCG TTCATTCCCT
AATGCTAAGG TAGTAACTGA AATGTCGGCT AATGGATTTG TTAATGCTCT AAACTACAAC
AAGGAAAATG TAGTGTTATT ACAGTCGAAT GATATAGGTT ACGTGTCGAT GGCAGTGCGT
TTGTTGCACA ATGCGCTTAA ATCTAAAAGG AACAATACCT TCCCTAAGAT TATGTTGGCG
ACTGTGGATA GAGGTTCAGT ATACGATTCT AATAATCTTT CTAACAACCA GCTATCCGAT
TTACGCTTTA CTTATCCTAC TGTAAATAAA TATTCTAATG GTACAGATAG TTTTTCTGCG
CGATATTTAA AGACTTATGG TATTCTACCT AATAAGTATG CTATTCGCGG GTTTGACCTT
ACTATGGATG CTGTATTGCG TTTGGGAGTA TCGGGCAATC TTACCAGTGC CAATACACGT
ATAGGAGAGA CTTCTTACTT AGAGAATAAA TTTGCTTACC TAAAAAATTT CTATAAAGGT
GGTGGCTATG AAAACCAAGG CGTATATATT GTACAGTATG ACAATATGGA AGTAAAAGAA
TTAAAATAA
|
|---|
| Protein sequence | MKQLFTLALL LCLGVAYAQP QTYTANNYES IENIAKTYRF SPADILKLNP GLKDGVQKGM
TINIPISKVK HYNTQRPVGF TTHLVKGGET FFGLSQKYNI TIDDLKRYNL DLYIRELQEG
ERITIPLFSK TAEMVQKSVQ GQKRYVVKPQ ETLWRIAKNH NVSVEELEKL NKNEKGFNPN
SIREGQEIWV PASSTDSTEP EPPARPNTKK EVVLYLVERG EGFYSLERKF GLSEAELVKL
NPSLKDGLKS DAQIWIPKEN YEHYKSASQN NTANYNFQNS NNTLRSASSP ANVKEISYIL
PFKLSDVSTG QIAIIKSRLT ENKLTPVATD FYSGALIALD SLQKMGYKFK VNVYDSEGDL
KKIASNASVQ NSQVVIGPFT TKSFNTLASL VTNNNTILLA PLSNKNITLN PNVYQTLPND
EVLQAQMIDY LNKNYSDENM IILADSKNSS LREKLERSFP NAKVVTEMSA NGFVNALNYN
KENVVLLQSN DIGYVSMAVR LLHNALKSKR NNTFPKIMLA TVDRGSVYDS NNLSNNQLSD
LRFTYPTVNK YSNGTDSFSA RYLKTYGILP NKYAIRGFDL TMDAVLRLGV SGNLTSANTR
IGETSYLENK FAYLKNFYKG GGYENQGVYI VQYDNMEVKE LK
|
|---|
| |