| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1860 |
|---|
| Symbol | |
|---|
| ID | 8368308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2225722 |
|---|
| End bp | 2226207 |
|---|
| Gene Length | 486 bp |
|---|
| Protein Length | 161 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 644984302 |
|---|
| Product | phosphoribosylaminoimidazole carboxylase, catalytic subunit |
|---|
| Protein accession | YP_003141966 |
|---|
| Protein GI | 256820687 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0041] Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase |
|---|
| TIGRFAM ID | [TIGR01162] phosphoribosylaminoimidazole carboxylase, PurE protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGTAG CTGTGGTAAT GGGAAGCAAG AGTGATTTGC CTGTGATGCA GGACGCTATT
GATATCCTCA AGTCCTTTGG TATCACAACT GTGGTAGATA TCGTATCGGC GCATCGCACG
CCTGAAAAGC TGATGGAGTT CAGTCAGAAC GCTCATAAAA AAGGCATTCA GGTAATTATT
GCGGGAGCGG GAGGTGCAGC TCATTTACCT GGTATGGTCG CCTCGATGTC GCCTTTGCCT
GTGATAGGTG TGCCGGTGAA AAGCAGTAAC TCTATTGACG GTTGGGATTC TATCCTTTCT
ATCTTACAAA TGCCTGGCGG AGTGCCTGTG GCTACCGTAG CTTTAAATGC TGCTAAGAAC
GCAGGTTTAT TAGCCGTACA AATATTGGCA AGTGCCGACG CTGAGCTCTT GCAAAAAATG
ATTGATTATA AAGAAAATTT GAAACAAGCG GTGCTTACTG CCGCAGCAAC CCTTGACGAT
GAATAA
|
|---|
| Protein sequence | MKVAVVMGSK SDLPVMQDAI DILKSFGITT VVDIVSAHRT PEKLMEFSQN AHKKGIQVII
AGAGGAAHLP GMVASMSPLP VIGVPVKSSN SIDGWDSILS ILQMPGGVPV ATVALNAAKN
AGLLAVQILA SADAELLQKM IDYKENLKQA VLTAAATLDD E
|
|---|
| |