| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1838 |
|---|
| Symbol | |
|---|
| ID | 8368286 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | - |
|---|
| Start bp | 2197583 |
|---|
| End bp | 2198803 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 644984280 |
|---|
| Product | cysteine desulfurase, SufS subfamily |
|---|
| Protein accession | YP_003141944 |
|---|
| Protein GI | 256820665 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0520] Selenocysteine lyase |
|---|
| TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0112034 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAGTA TTCTTGAAAT AAGAACAGAC TTCCCTATAC TCTCACGCAC TATTCATAAC
AAACCTCTTA TCTATTTTGA TAATGGAGCA ACTTCGCAAA CACCTACACA AGTGATAGAG
GCAATAGTGC ATTATTACAG TTACCAAAAT GCTAATATAC ACCGTGGAGT ACACACTCTC
AGCCAAGAAG CTACTGATGC TTATGAAGAA GCGAGGAAGA AACTACAGCG CCACTTCAAT
GCCCGTAAAA GCTCTGAAAT TCTTTTTACT GCGGGAACTA CACACGGTAT TAATTTAGTG
GCTAACGGTT ATAGCGCACT GATGCAAGAG AGAGACGAAG TAATTATTTC GGCTTCAGAA
CACCACAGCA ATATAGTGCC TTGGCAATTA GCTTGCCAAC GGAGTGGAGC TACCTTAAAA
GTAATCCCGA TGAATGAGAA AGGAATTTTG GACTTAGAGG TGTATAACCA ACTGCTAAAT
AAACGTACGA AGATAGTGTG TGTACAGCAC GTATCGAACG CCTTAGGAAA TATTCACCCT
ATAGAAGAAA TTATAGAAAA AGCACACCGT GTAGGAGCTG TTGTATTAGT AGATGGAGCA
CAAGCAGCCC CACATTTGCA ACCCGATATG CAAACTCTCG ATGTTGATTT CTATGCTGTT
TCAGCTCATA AAATGTACGG ACCTACGGGG ATAGGAGCGT TGTATGGTAA AGAAGAATTA
CTATTACAAT TACCTCCTTA TCAAGGAGGG GGAGAAATGA TAAAAGAAGT GCATTTTGAA
GAGAGTACTT ATGCCGACCT CCCTTATAAG TTTGAAGCAG GTACTCCTAA TATTTGTGGA
GGTATTGCGT TTGGAACTAC AATTGACTAT ATACAGCAAT TGGGAATGGA AGCTATTGCT
ACACACGAAC ACAAACTATT AGAATATGCT ATCGCTAAAT TACAAAATAT AGAAGGCATT
ACTCTTTACG GTAATGATGA TTTGAGTAAG CGTACCGCTG TTATATCATT TAACTTACAA
AACATTCACC CTTACGATGT AGGTGTAATT CTCGACCAAT TTGGAATTGC TGTACGTACG
GGGCATCATT GTGCCCAACC TATTATGGAC TTCTACTGCA TACCAGGTAC AGTTCGTGCC
AGCTTTGCTG TTTACAATAC CTTTGAAGAA ATAGATACCT TTGTAGAAGC TGTAAAAAAA
GCTCAGAAAA TGTTAAGCTG A
|
|---|
| Protein sequence | MKSILEIRTD FPILSRTIHN KPLIYFDNGA TSQTPTQVIE AIVHYYSYQN ANIHRGVHTL
SQEATDAYEE ARKKLQRHFN ARKSSEILFT AGTTHGINLV ANGYSALMQE RDEVIISASE
HHSNIVPWQL ACQRSGATLK VIPMNEKGIL DLEVYNQLLN KRTKIVCVQH VSNALGNIHP
IEEIIEKAHR VGAVVLVDGA QAAPHLQPDM QTLDVDFYAV SAHKMYGPTG IGALYGKEEL
LLQLPPYQGG GEMIKEVHFE ESTYADLPYK FEAGTPNICG GIAFGTTIDY IQQLGMEAIA
THEHKLLEYA IAKLQNIEGI TLYGNDDLSK RTAVISFNLQ NIHPYDVGVI LDQFGIAVRT
GHHCAQPIMD FYCIPGTVRA SFAVYNTFEE IDTFVEAVKK AQKMLS
|
|---|
| |