| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1709 |
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| Symbol | |
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| ID | 8368155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Capnocytophaga ochracea DSM 7271 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013162 |
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| Strand | - |
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| Start bp | 2043377 |
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| End bp | 2044540 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 644984149 |
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| Product | RNA-binding S4 domain protein |
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| Protein accession | YP_003141815 |
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| Protein GI | 256820536 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.397798 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGAAAACA AAAAATTTAA TAATTACAAG AAGAATAGCT ATTCCTCTAA TGGGAATTCA
GAGAAAAAGC CTTACAATTC TTCTTATAAC AGCGGTAACA ATCGCAACAA CAACGGCAAT
AGTTCATTCA AAAAGAAAAC TTACGGACAG AACGAAGGAC GCAGTTACAG CAATAACAGT
GGCAACCGTT ATGAAAATAA TAGCGGTAAT CGTTATGAAA ATAACGGTGG CAATCGTTAC
AACAATAGTA ACAATGGTTA CAACTCCGAA AATAGAAAAT CTTACAATCC TAACTTCAAA
AAGAACGAGG GATATAGTAA ACCAAACAAC TACAACCATA ATGAAGGTTA TAACCGAAAC
GATAATTATA AAAAACCTTT CAACAAAAAA CCTTATAACA ATACCTACAA ACCTCAAAAC
AACGCTCCTA TAGACTACCC TACTACCACT CCAGCTGAAG TGCGTTTGAA CAAATATATT
GCCGATGCTG GTATCTGCTC ACGCCGTAAT GCCGATATGT ATATTTCGGC AGGTAATGTA
ACGGTGAATG GTGAAGTAAT GACCACGCTT GGCTATCGCG TAAAGCCTAC TGATGAAGTG
CGTTTTGATG GAAAACTCCT TTCTTCTGAA AAGAAAGAAT ACATCTTGCT CAACAAACCC
AAAGGTTTTA TCACCACTAC CAACGATGAG AAAGGACGCA AAACTGTAAT GGATTTGGTC
GCAAATGCTA CCAATGTACG CATCTTGCCT GTAGGTCGTT TAGACAGAGC TACTACAGGT
TTGTTATTGC TTACCAATGA TGGAGAGCTT ACCAAAAAAC TCACTCACCC CACTCACGGT
GTGCGCAAAA TATACCACGT AATTCTCGAC CGCAAACTCG ACTACAAAGA CTTTATGAAG
GTACAAGACG GATTAGAGTT AGAAGATGGT CTTATTGAAG TAGATGAAAT CAGCTATGTG
AACGACAAAC CTAAGAATGA AATAGGCATC AAAATTCACA GTGGTCGCAA TCGCATTGTA
CGTCGTATTT TTGAACACTT GGGCTATCAA GTAGAAAAAC TCGACCGTGT AGTATTTGCT
GGGCTTACTA AAAAAGATTT ACCTCGTGGT CATTGGCGTC GCCTCACTCA GCAAGAAGTA
ATCAATCTTC GCAATATGAA GTGA
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| Protein sequence | MENKKFNNYK KNSYSSNGNS EKKPYNSSYN SGNNRNNNGN SSFKKKTYGQ NEGRSYSNNS
GNRYENNSGN RYENNGGNRY NNSNNGYNSE NRKSYNPNFK KNEGYSKPNN YNHNEGYNRN
DNYKKPFNKK PYNNTYKPQN NAPIDYPTTT PAEVRLNKYI ADAGICSRRN ADMYISAGNV
TVNGEVMTTL GYRVKPTDEV RFDGKLLSSE KKEYILLNKP KGFITTTNDE KGRKTVMDLV
ANATNVRILP VGRLDRATTG LLLLTNDGEL TKKLTHPTHG VRKIYHVILD RKLDYKDFMK
VQDGLELEDG LIEVDEISYV NDKPKNEIGI KIHSGRNRIV RRIFEHLGYQ VEKLDRVVFA
GLTKKDLPRG HWRRLTQQEV INLRNMK
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