| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1700 |
|---|
| Symbol | |
|---|
| ID | 8368146 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2033149 |
|---|
| End bp | 2035131 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 644984140 |
|---|
| Product | OmpA/MotB domain protein |
|---|
| Protein accession | YP_003141806 |
|---|
| Protein GI | 256820527 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2885] Outer membrane protein and related peptidoglycan-associated (lipo)proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAC AAATACCTTT CTATTTATTA GCCATTCTTG TAAGTACTTT CACACAAACT
ATTTGTGGAC AAAGTGAAAA AGAAGCTTTA CAGAAAGCAG CTAACTATTA CAAGAACTTG
GATTATGTAC AGGCTATTAA TGCCTATGAA AGTATTGCCC GTAAAGGAGT AGAACCCCAA
GAGCTATTAG AGAATTTGGC TAATGCTTAC TACTATAATG CCGATTACAA ACAAGCAAAT
AAGTGGTATG CAAAACTCTT TGCAAATACT GATGCTAAGA CAGGAAAACC TTATAATATT
AATCCTGAAT ATTACTATCG TTATGCGCAA ACTTTAAAAT CAGTGGAAGA TTATGAAGCC
TCTGACAAAA TGATGGATAA GTTTGTGGCT CTTAAAGGGA ATACTGATTC GCGTGCAGTA
CTCTTTCAAA AGAACAGAGA TTATCAGGCA GAAATTAAGC GGAATTCTGA TAGAATGGTA
TTACACCCCT TGCAGATTAA TACTAATAAA TCAGAGTATG GGACAGCTTT TTATGGTAAT
AATATAGTAT ATGCTACTAG CAAAGGTGGT ATTTTAAAGA AGCGTGCAGA TTGGACAGGA
GATAATTTTT ATAGTTTGTA TGAGGCAACT ACCGATAGCT TGCAAGTTTT TAAGAAAGGA
AAGCTCAATG GTATCAATAC TAAGTTTAAC GAATCGACAG CTGCGTTTAG CAAAGATGGA
AACACGATTT ATTTTACTCG TAATAACTTT ATCCATAATG AAGTAAAGAC TAATGGGGAC
GAAACAGTAT TGTTGAAGAT ATTTAAAGCT ACTAAAAATA AGAGCGGTAA CTGGGAAGAT
GTAAAAGAAA TGCCTTTTAA TAGTAATATT CATAGTGTAG CCCACCCTGC TTTAAGTCCT
GATGACAAAT ATATTTATTT TGCATCGGAT ATGAAAGGCA CTATTGGAGC ATCGGATATT
TATCGTGCTA AAATACTGAA AAACGGTTAT GGGAAGCCAG AGAATTTAGG AGCACTTATC
AATACACAAG GTAGAGAGTC TTTCCCATTT GTTTCAGATG ATAACATATT GTATTATTCA
TCAGATGGTT TTCCAGGTTT AGGAGGATTA GATATTTATG CCGTAAAATT AGATGAGGAA
GGCAATCCTA TTTCTAAACC TGTGAATGTA GGTCGCCCTG CCAATAGTGC TGAAGATGAT
TTCTGTTATG TAATTAACAC TCATACTAAA ATAGGATATC TTACTTCGAA CAGACCAGGA
GGTAAAGGGA GTGATGATAT TTATAGTTTT TATGAGGAAG CCCCAGTACA GTTCTCGTGT
AAACAAGCCA TTAATGGGGT TGTTAAAAAT GCAAAAAGCT TAGAAGTAAT AGCAGATGCT
AAAATTACTT TATTAGATAA GTCATTGAAG TTAATAGAAG AACAAATCTC GAATAAGGAG
GGGACTTTTA GTTTTCTTTA TACTTCCAAT TGCAAAGATG AACAGCTAAT AATTAAAACA
ATAAGGGAAG GTTTTTCTTC TGATGAGCAA AATATTACTT TAACAGGATT AAAAGACGCA
TATGCTGAAG TATTGTTATC TCCTATTGTT GAGAAGAAAC CTATAAAAAT AGGAGATGAT
TTATCAAAGG AATTAAAAAT AGATAATATA TACTTCGACT ATGATAAAGC TAATATTCGT
CCTGATGCAG CTGAACAGTT GGCTAAAATA GTAAAAGTAA TGGAAGAGTA CCCTACTATG
AAAATAGATG TGCGCTTGCA TACTGATAGT AGAGGTTCTG ATAGCTATAA CTTAGCTTTG
TCACAAAGAC GTGCAAAATC AACTATTAAG TGGCTTATAG CTCACGGTAT TCACAAAGAT
AGGATTACGG GTAAGGGATA TGGAGAAACG CAATTAGTAA ATGGTTGCTC AAATGGAGTA
CCCTGTACTG AAGAACAGCA TCAAGCAAAC CGTCGTAGTG AATTTATTAT TATATCAATG
TAA
|
|---|
| Protein sequence | MKKQIPFYLL AILVSTFTQT ICGQSEKEAL QKAANYYKNL DYVQAINAYE SIARKGVEPQ
ELLENLANAY YYNADYKQAN KWYAKLFANT DAKTGKPYNI NPEYYYRYAQ TLKSVEDYEA
SDKMMDKFVA LKGNTDSRAV LFQKNRDYQA EIKRNSDRMV LHPLQINTNK SEYGTAFYGN
NIVYATSKGG ILKKRADWTG DNFYSLYEAT TDSLQVFKKG KLNGINTKFN ESTAAFSKDG
NTIYFTRNNF IHNEVKTNGD ETVLLKIFKA TKNKSGNWED VKEMPFNSNI HSVAHPALSP
DDKYIYFASD MKGTIGASDI YRAKILKNGY GKPENLGALI NTQGRESFPF VSDDNILYYS
SDGFPGLGGL DIYAVKLDEE GNPISKPVNV GRPANSAEDD FCYVINTHTK IGYLTSNRPG
GKGSDDIYSF YEEAPVQFSC KQAINGVVKN AKSLEVIADA KITLLDKSLK LIEEQISNKE
GTFSFLYTSN CKDEQLIIKT IREGFSSDEQ NITLTGLKDA YAEVLLSPIV EKKPIKIGDD
LSKELKIDNI YFDYDKANIR PDAAEQLAKI VKVMEEYPTM KIDVRLHTDS RGSDSYNLAL
SQRRAKSTIK WLIAHGIHKD RITGKGYGET QLVNGCSNGV PCTEEQHQAN RRSEFIIISM
|
|---|
| |