| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Coch_1686 |
|---|
| Symbol | |
|---|
| ID | 8368132 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Capnocytophaga ochracea DSM 7271 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013162 |
|---|
| Strand | + |
|---|
| Start bp | 2013310 |
|---|
| End bp | 2015079 |
|---|
| Gene Length | 1770 bp |
|---|
| Protein Length | 589 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 38% |
|---|
| IMG OID | 644984126 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003141792 |
|---|
| Protein GI | 256820513 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.000237828 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGACAC CCTATTTTAA ACAATCTTTT CTTATTGTTT TATTTGCAAC ACTCATTTTC
ATTGGATTTA AGAACTGTTT ACCCGCGCGT ATTTTTCCCG AAACTAAAGC CTCAGGAAGC
AATGTAGTAG TAGATAGCTT AATGTTGGAA GCCATTTCAG GTAAAGAAAT CGACAAAGTA
CTCAGCCAAG CCAATGATTC TTTAGCACAA GAACAACGAC TTAAAAAGTC CGACCAGTAT
CTTTTTTCTT TCTTTAAAAA ATTAGAAGAG TTAGAACAAA CTAAAAATGG TAAAATAAGA
ATCGCTTATT ACGGCGATTC GATGACTGAT GGCGACCTCA TCGTGCAAGA TTTAAGAGCT
CTTTTCCAAA ACGCTTTCGG GGGGTTAGGA ATTGGCTTTT TGCCCATTGC TTCTGAGTCG
GCTAAATCAA GAGGAAGCGT ATTCCATTCT TATTCCAATA CTTGGAAAAC CCAATCTTAT
GTGAATGTAA AACGCCCTAA ACGTCCTTTT GGTGTCTCTG GGCAAGTGTT CTTTACACAA
GGCAATGGCA CGTGGGTACA ATATAGGTCA TCAAACCAAG CTCATATTAG TCAGTTGTAT
GCACCAGCAT TGTTCTATGG TGCTTCTGGT AATAAAGAGG CAAAAGTAGA AATTGCCTAT
AACGATACTG TAAGAGTAGT AAAATCATTA GATACTGATA AATTGCTGAA TGTATTGCCT
TTAACCGAAG GGGCAAACAC TAAATCAGTG CGTATTACTT TCTATAAGTC CGATTCTATT
CCTATTTATG GAGTGGGCTC AATGCAAGGT AAAGGCGTAT ATATAGATAA CTTTTCAAGC
AGAGGTAACT CAGGCTTACC CTTATCGCTC TTTAATCCTG ATTTAATGAG AGCTTTCGAT
AGAGCGTTAG GTGGATATGA CCTTGTAGTA TTACACTTTG GTGCCAATGT ACTCAATTAC
GGCACACTCG ATTATTCGTG GTATGAACGC GGAATGACAA AGGTGATTAA CCAGATAAGA
GCTTGCTTCC CTCATACCTC AATTCTTGTT ATCTCTACCG CCGATAAGTC TACTAAAATA
GATATGGAGA TGCAAACCGA TAAAGCAGTA GTACCTTTGG CAAATGCACA ACGGAAATAT
GCACAAGATA CTCGCTCTGG TTTTATTAAT TTATATGAAC TGATGGGGGG TAAAGGCTCT
ATGAAACAAT GGGTAGAGGC AAATCCACCA TTAGCAGGTA AAGACTATAC TCACTTTAAT
CCAAGAGGAG CTAAAAAAGT AGCCCACCTT ATCTATAATA AACTTATGGA AGAGTATGAG
CACTATAAAG ATCCTCGTAA TAGTGAAAAA GCCGATGTGT TCCAAGAAAG AATAAAAGAA
ATTCAAACAG TACGAACCGT TACTCCTACT ACTCAACCTA ATGTAAATAG AACAAGATCA
CAAACTGTAA CAACTCAGCG AGTACAATCA CCAACTACTC AGCGAGTACA AAGTACAACA
ACTCAGCGAG TGCAAAGTAC AACCACTCAG CGGGTACAAA GTGCGACTAC TCAACGAGTG
CAAAGTACAA CTACTCAACG AGTACAAAGT ACAACGACTC AACGGGTACA AAGTACAACG
ACTCAACGGG TACAAAGTAC AACGACTCAA CGAGTACAAA GTACAACGAC TCAGCGAGTA
CAACCATCAA CAATTCAGGC AGTACAGAAT ATTACAAATA AAGTGCATAA AGATACTATT
AAAGAAAAAA AAGATAATTT ACATAGATAA
|
|---|
| Protein sequence | MKTPYFKQSF LIVLFATLIF IGFKNCLPAR IFPETKASGS NVVVDSLMLE AISGKEIDKV
LSQANDSLAQ EQRLKKSDQY LFSFFKKLEE LEQTKNGKIR IAYYGDSMTD GDLIVQDLRA
LFQNAFGGLG IGFLPIASES AKSRGSVFHS YSNTWKTQSY VNVKRPKRPF GVSGQVFFTQ
GNGTWVQYRS SNQAHISQLY APALFYGASG NKEAKVEIAY NDTVRVVKSL DTDKLLNVLP
LTEGANTKSV RITFYKSDSI PIYGVGSMQG KGVYIDNFSS RGNSGLPLSL FNPDLMRAFD
RALGGYDLVV LHFGANVLNY GTLDYSWYER GMTKVINQIR ACFPHTSILV ISTADKSTKI
DMEMQTDKAV VPLANAQRKY AQDTRSGFIN LYELMGGKGS MKQWVEANPP LAGKDYTHFN
PRGAKKVAHL IYNKLMEEYE HYKDPRNSEK ADVFQERIKE IQTVRTVTPT TQPNVNRTRS
QTVTTQRVQS PTTQRVQSTT TQRVQSTTTQ RVQSATTQRV QSTTTQRVQS TTTQRVQSTT
TQRVQSTTTQ RVQSTTTQRV QPSTIQAVQN ITNKVHKDTI KEKKDNLHR
|
|---|
| |