Gene Coch_1603 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCoch_1603 
Symbol 
ID8368049 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCapnocytophaga ochracea DSM 7271 
KingdomBacteria 
Replicon accessionNC_013162 
Strand- 
Start bp1912261 
End bp1913286 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content44% 
IMG OID644984043 
ProductMandelate racemase/muconate lactonizing protein 
Protein accessionYP_003141709 
Protein GI256820430 
COG category[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only 
COG ID[COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily 
TIGRFAM ID[TIGR01927] o-succinylbenzoic acid (OSB) synthetase 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.929167 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTAAAC ACATTCTCAA TTTTAAACGT CCTTCAGGGA CATCAAGAGG GGTTCTTACC 
TCCAAAGAGA CCTTTTTTTT GGTAATAGAA CAAGAGGGCA AAAAAGGCAT AGGAGAATGC 
AACCTCTTTC GTGGGCTTAG TGCCGATGAC GTACCTGATT ATGAGGCTAA ATTGCAATGG 
GTAGAACAAC ACTTACACTT GGGAGAAAAG GCTTTATTAG AAGAGCTCAA GACTTTTCCG 
TCTATACAAT TTGGTGTGGA ACAAGCCTTT AGGTCGGTAG CAGCTCCACA CTGGTACGAG 
CTCTTTCCTT CGAACTTTAC GAAGGGAAAA GACGCTATAC CTATCAATGG ACTCATTTGG 
ATGGGCTCTC CCGACTTTAT GAAAGCGCAG ATAAAAGAGA AACTCGCTCA GGGTTTTCGC 
TGTATCAAAA TGAAGATAGG AGCGATTGAC TTTGAAGAAG AATACCGTAT CTTGAAAGCC 
TTGCGCAATG AGTTTTCGGC AAGCGATATA GAAATACGGG TAGATGCTAA TGGTGCGTTT 
CAAGCAACTG AGGCACTGAG GTATTTAGAA CGCTTGGCTA CTTTGCAATT ACACTCTATT 
GAGCAACCTA TACGGGCAGG ACAGTGGGAA GCGATGGCTG AACTATGTGA GCAAACACCT 
CTGCCTATCG CCCTAGACGA GGAGCTGATA GGGGTATTTA CAAGGGAAGA AAAACAACGA 
CTTCTGAGAG AGATACAACC GCAGTATATC ATTTTAAAAC CTTCGCTTAT AGGAGGTTAT 
AGAGGTTCTG AAGAATGGAT AACCCTCGCC GAAACATTAG GCATAGGTTG GTGGGTAACC 
TCGGCTTTGG AAAGCAATAT AGGGCTCAAT GCCATCGCAC AGTGGACGTA CACACTTCAC 
AGCTCAATGC CCCAAGGCTT AGGCACGGGA ATGCTGTATA CAAACAATAT ACCTTTTCCT 
TTGTATGTGG AAAACGGACA TTTAGGTTTT AATCCTTGTG AGCGCGTAAC ATTTCCCTTT 
TCATAG
 
Protein sequence
MIKHILNFKR PSGTSRGVLT SKETFFLVIE QEGKKGIGEC NLFRGLSADD VPDYEAKLQW 
VEQHLHLGEK ALLEELKTFP SIQFGVEQAF RSVAAPHWYE LFPSNFTKGK DAIPINGLIW 
MGSPDFMKAQ IKEKLAQGFR CIKMKIGAID FEEEYRILKA LRNEFSASDI EIRVDANGAF 
QATEALRYLE RLATLQLHSI EQPIRAGQWE AMAELCEQTP LPIALDEELI GVFTREEKQR 
LLREIQPQYI ILKPSLIGGY RGSEEWITLA ETLGIGWWVT SALESNIGLN AIAQWTYTLH 
SSMPQGLGTG MLYTNNIPFP LYVENGHLGF NPCERVTFPF S